RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 ADAMTS17Q8TE56 1095 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 SMARCE1Q969G3 411 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 TMEM143Q96AN5 459 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 EXOC2Q96KP1 924 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 CELF4Q9BZC1 486 aaKnown RBP6.28□□□□□ -1.4
SCAF11-213ENST00000550629 INO80BQ9C086 356 aaPredicted RBP6.28□□□□□ -1.4
SCAF11-213ENST00000550629 IPPKQ9H8X2 491 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 EXOC1Q9NV70 894 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 SNTG2Q9NY99 539 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 ARHGAP28Q9P2N2 729 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 TBX21Q9UL17 535 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 WASF3Q9UPY6 502 aa6.28□□□□□ -1.4
SCAF11-213ENST00000550629 MYH9P35579 1960 aaKnown RBP6.27□□□□□ -1.4
SCAF11-213ENST00000550629 UBE4BO95155 1302 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 DNAH12Q6ZR08 3092 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 WDR81Q562E7 1941 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 RSPH10B2B2RC85 870 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 FAM47E-STBD1D6RA91 191 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 EIF3DO15371 548 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 KLRC4O43908 158 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 GPR32O75388 356 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 LTFP02788 710 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 RSPH10BP0C881 870 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SRGAP2CP0DJJ0 459 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 CKBP12277 381 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 IDEP14735 1019 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 DARSP14868 501 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SFPQP23246 707 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 GPC3P51654 580 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 PEX3P56589 373 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 NLRP11P59045 1033 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 PTENP60484 403 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SNRPFP62306 86 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SUMO1P63165 101 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 GTF2BQ00403 316 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 NCBP1Q09161 790 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 MGAT3Q09327 533 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 COASYQ13057 564 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 DRP2Q13474 957 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 PNOCQ13519 176 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 CAMK4Q16566 473 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 FAM187BQ17R55 369 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 BMT2Q1RMZ1 405 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 CT47A1Q5JQC4 288 aaPredicted RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 FAM26FQ5R3K3 315 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 FOXR2Q6PJQ5 311 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 LRRC8DQ7L1W4 858 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 EPM2AIP1Q7L775 607 aaPredicted RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 ZNF720Q7Z2F6 126 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 HAUS6Q7Z4H7 955 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SRGAP1Q7Z6B7 1085 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 SFR1Q86XK3 245 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 RHPN2Q8IUC4 686 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 ZBTB8OSQ8IWT0 167 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 TRIM48Q8IWZ4 208 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 RNF149Q8NC42 400 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 TMEM161BQ8NDZ6 487 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 TMEM174Q8WUU8 243 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 DNAJB3Q8WWF6 145 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 STAMQ92783 540 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 NLRP4Q96MN2 994 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 ANP32EQ9BTT0 268 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 STRA6Q9BX79 667 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 GCOM2Q9BZD3 368 aaPredicted RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 FAM49AQ9H0Q0 323 aaPredicted RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 BLZF1Q9H2G9 400 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 HIPK3Q9H422 1215 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 MRPL44Q9H9J2 332 aaKnown RBP6.27□□□□□ -1.41
SCAF11-213ENST00000550629 IFT122Q9HBG6 1241 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 KMT5AQ9NQR1 393 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 ATP11BQ9Y2G3 1177 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 TRPV2Q9Y5S1 764 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 BRCA2P51587 3418 aa6.27□□□□□ -1.41
SCAF11-213ENST00000550629 LRRIQ4A6NIV6 560 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 CCDC169A6NNP5 214 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 K7ERI5 159 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 DDX3XO00571 662 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCAF11-213ENST00000550629 ACKR2O00590 384 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 SLC16A4O15374 487 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 CAVIN2O95810 425 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 TIMP1P01033 207 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 CHRNA1P02708 482 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 VTNP04004 478 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 PFKMP08237 780 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 AXLP30530 894 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 SOX10P56693 466 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 MBTD1Q05BQ5 628 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 STRN3Q13033 797 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 TUSC3Q13454 348 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 MORC3Q14149 939 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 PUM1Q14671 1186 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCAF11-213ENST00000550629 MAPK6Q16659 721 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 HABP4Q5JVS0 413 aaKnown RBP6.26□□□□□ -1.41
SCAF11-213ENST00000550629 FBXO47Q5MNV8 452 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 ZNF618Q5T7W0 954 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 ZNF658Q5TYW1 1059 aaPredicted RBP6.26□□□□□ -1.41
SCAF11-213ENST00000550629 CAVIN1Q6NZI2 390 aaKnown RBP6.26□□□□□ -1.41
SCAF11-213ENST00000550629 TSHZ1Q6ZSZ6 1077 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 MAEAQ7L5Y9 396 aa6.26□□□□□ -1.41
SCAF11-213ENST00000550629 MAMDC2Q7Z304 686 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms