RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ABCC13	Q9NSE7	274 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PARVA	Q9NVD7	372 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	CLIC5	Q9NZA1	410 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	PCDHA13	Q9Y5I0	950 aa		10.64	□□□□□ -0.71
CPSF7-221	ENST00000543545	COL4A4	P53420	1690 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TSC2	P49815	1807 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	NCAN	O14594	1321 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	C2orf78	A6NCI8	922 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SIGLEC16	A6NMB1	481 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TLR5	O60602	858 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	MOSPD3	O75425	235 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TADA3	O75528	432 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	PAPLN	O95428	1278 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	GJB6	O95452	261 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TBX18	O95935	607 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CKM	P06732	381 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	GLI1	P08151	1106 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZDHHC11B	P0C7U3	371 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	MBL2	P11226	248 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	DES	P17661	470 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SP100	P23497	879 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	DDX6	P26196	483 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ATP5C1	P36542	298 aa	Known RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SCNN1A	P37088	669 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	AVPR1A	P37288	418 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TFF2	Q03403	129 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	EFEMP1	Q12805	493 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	AAK1	Q2M2I8	961 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	PUS10	Q3MIT2	529 aa	Known RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	STXBP5	Q5T5C0	1151 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC26A9	Q7LBE3	791 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	OTOP3	Q7RTS5	596 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM139	Q8IV31	216 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	DEFB106A	Q8N104	65 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	TXLNB	Q8N3L3	684 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARL14EP	Q8N8R7	260 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	C3orf20	Q8ND61	904 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ACRBP	Q8NEB7	543 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SUSD6	Q92537	303 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	FGF13	Q92913	245 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ACSF2	Q96CM8	615 aa	Predicted RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	PIWIL1	Q96J94	861 aa	Known RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CYP2S1	Q96SQ9	504 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CDK5RAP1	Q96SZ6	601 aa	Known RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	DESI2	Q9BSY9	194 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC46A2	Q9BY10	475 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	PACSIN1	Q9BY11	444 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CCSER2	Q9H7U1	834 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	MRPL47	Q9HD33	250 aa	Known RBP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	ASNSD1	Q9NWL6	643 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	OSER1	Q9NX31	292 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CTTNBP2NL	Q9P2B4	639 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	THEG	Q9P2T0	379 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	RASAL2	Q9UJF2	1139 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	CDH7	Q9ULB5	785 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	NAALADL1	Q9UQQ1	740 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SCIN	Q9Y6U3	715 aa		10.63	□□□□□ -0.71
CPSF7-221	ENST00000543545	SYNJ2BP-COX16	A0A087WUM0	186 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	SLC12A8	A0AV02	714 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NRG2	O14511	850 aa	Predicted RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	DPYSL4	O14531	572 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZNF263	O14978	683 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	MDM4	O15151	490 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	COCH	O43405	550 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	TMEM253	P0C7T8	217 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	PDGFRA	P16234	1089 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NOP2	P46087	812 aa	Known RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	TUB	P50607	506 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NAP1L1	P55209	391 aa	Known RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	CCZ1B	P86790	482 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	CCZ1	P86791	482 aa	Predicted RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	MAMLD1	Q13495	774 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	SNX30	Q5VWJ9	437 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	PLEKHA7	Q6IQ23	1121 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	BHLHA9	Q7RTU4	235 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	MIB1	Q86YT6	1006 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NPAS3	Q8IXF0	933 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	EMC1	Q8N766	993 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	JOSD2	Q8TAC2	188 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	RXFP2	Q8WXD0	754 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	ARHGEF26	Q96DR7	871 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	RPGRIP1	Q96KN7	1286 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZSWIM3	Q96MP5	696 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	MCEE	Q96PE7	176 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	NUP85	Q9BW27	656 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	SMG9	Q9H0W8	520 aa	Known RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	FAM204A	Q9H8W3	233 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	OLA1	Q9NTK5	396 aa	Known RBP	10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	SMPD4	Q9NXE4	827 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	GDE1	Q9NZC3	331 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	MARCH2	Q9P0N8	246 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	COX16	Q9P0S2	106 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	SFMBT1	Q9UHJ3	866 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	ZMYM5	Q9UJ78	669 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	DNMT3L	Q9UJW3	386 aa		10.62	□□□□□ -0.71
CPSF7-221	ENST00000543545	INTU	Q9ULD6	942 aa		10.62	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms