RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	OSER1	Q9NX31	292 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	GMIP	Q9P107	970 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	TMEM59L	Q9UK28	342 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	STRIP2	Q9ULQ0	834 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	SCML2	Q9UQR0	700 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	ZKSCAN5	Q9Y2L8	839 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	PAXBP1	Q9Y5B6	917 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	SPTBN5	Q9NRC6	3674 aa	Known RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CCDC195	A0A1B0GUA6	201 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259		A0A1W2PQH9	124 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FAM92A	A1XBS5	289 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	SIGLEC16	A6NMB1	481 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	BUB1	O43683	1085 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FBXO21	O94952	628 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FYN	P06241	537 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CSH1	P0DML2	217 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CSH2	P0DML3	217 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	RFC1	P35251	1148 aa	Predicted RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	SNX16	P57768	344 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	NTHL1	P78549	312 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	OGDH	Q02218	1023 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	KIF5A	Q12840	1032 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	ADAM15	Q13444	863 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	VEPH1	Q14D04	833 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	TMC5	Q6UXY8	1006 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CPNE8	Q86YQ8	564 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	ZDHHC17	Q8IUH5	632 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	SCML4	Q8N228	414 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	MICALL1	Q8N3F8	863 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	EFHB	Q8N7U6	833 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	HDAC7	Q8WUI4	952 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	MYLIP	Q8WY64	445 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	RFFL	Q8WZ73	363 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	EDEM1	Q92611	657 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FBXO32	Q969P5	355 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FAM149B1	Q96BN6	582 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF707	Q96C28	371 aa	Predicted RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	TRIM11	Q96F44	468 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CEP295NL	Q96MC4	621 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF512	Q96ME7	567 aa	Predicted RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	MCEE	Q96PE7	176 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CDCA3	Q99618	268 aa	Predicted RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	SELENOO	Q9BVL4	669 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	APOL5	Q9BWW9	433 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	IRX2	Q9BZI1	471 aa	Predicted RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	FBXO44	Q9H4M3	255 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	LUC7L	Q9NQ29	371 aa	Known RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	PARVA	Q9NVD7	372 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	COMMD8	Q9NX08	183 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	CTTNBP2NL	Q9P2B4	639 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	WDR35	Q9P2L0	1181 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	NUDT5	Q9UKK9	219 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	GUCA1B	Q9UMX6	200 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	HELZ	P42694	1942 aa	Known RBP	9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	DOCK8	Q8NF50	2099 aa		9.79	□□□□□ -0.84
DDX55-208	ENST00000541259	MACROD2	A1Z1Q3	448 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TMEM191C	A6NGB0	347 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	BTNL10	A8MVZ5	291 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	ZSCAN12	O43309	604 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TADA3	O75528	432 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	MOCS3	O95396	460 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	LTF	P02788	710 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	F11	P03951	625 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	ZDHHC11B	P0C7U3	371 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	KRT3	P12035	628 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TFE3	P19532	575 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	FLT3	P36888	993 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	NOP2	P46087	812 aa	Known RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	YWHAG	P61981	247 aa	Known RBP eCLIP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	YWHAZ	P63104	245 aa	Known RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	PITX1	P78337	314 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	DLX2	Q07687	328 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF252P-AS1	Q0IIN9	211 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TCEAL1	Q15170	157 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TAF12	Q16514	161 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	RAB6C	Q53S08	254 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	EFHC1	Q5JVL4	640 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	RARS2	Q5T160	578 aa	Known RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	SYPL2	Q5VXT5	272 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	BSPRY	Q5W0U4	402 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	DCUN1D2	Q6PH85	259 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	SYCE2	Q6PIF2	218 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TMEM184A	Q6ZMB5	413 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	SLC26A9	Q7LBE3	791 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TMEM150A	Q86TG1	271 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	ITIH5	Q86UX2	942 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TMC8	Q8IU68	726 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	DEFB106A	Q8N104	65 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF564	Q8TBZ8	553 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	RXFP2	Q8WXD0	754 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	IRGQ	Q8WZA9	623 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	CASP10	Q92851	521 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	PPP2R3C	Q969Q6	453 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	TRMT2B	Q96GJ1	504 aa	Known RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	MYRFL	Q96LU7	910 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	GUCD1	Q96NT3	240 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	GAS2L1	Q99501	681 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	CDX2	Q99626	313 aa	Predicted RBP	9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	CORO1B	Q9BR76	489 aa		9.78	□□□□□ -0.84
DDX55-208	ENST00000541259	PRKD2	Q9BZL6	878 aa		9.78	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms