RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TBC1D14Q9P2M4 693 aa14.93□□□□□ -0.02
USP28-209ENST00000540925 NAGPAQ9UK23 515 aa14.93□□□□□ -0.02
USP28-209ENST00000540925 KIAA1549LQ6ZVL6 1849 aa14.93□□□□□ -0.02
USP28-209ENST00000540925 BECN2A8MW95 431 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 K7ESF4 209 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 SCAMP3O14828 347 aaKnown RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 ZBED1O96006 694 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 BRD2P25440 801 aaKnown RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 CCR3P51677 355 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 TKTL1P51854 596 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 SLC8A3P57103 927 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 SATB1Q01826 763 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 APBA1Q02410 837 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 CSTF1Q05048 431 aaKnown RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 GRSF1Q12849 480 aaKnown RBP eCLIP14.92□□□□□ -0.02
USP28-209ENST00000540925 NR1H3Q13133 447 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 MEA1Q16626 185 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 PKN3Q6P5Z2 889 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 GJB7Q6PEY0 223 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 TSSK4Q6SA08 328 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 GBP6Q6ZN66 633 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 Q6ZNB5 142 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 BBS7Q8IWZ6 715 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 PHTF2Q8N3S3 785 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 UBA3Q8TBC4 463 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 ENOX1Q8TC92 643 aaKnown RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 CD101Q93033 1021 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 FAM126AQ9BYI3 521 aaPredicted RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 ULBP1Q9BZM6 244 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 UBE2TQ9NPD8 197 aaPredicted RBP14.92□□□□□ -0.02
USP28-209ENST00000540925 HESX1Q9UBX0 185 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 APEX2Q9UBZ4 518 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 PCDHGA2Q9Y5H1 932 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 R4GN57 208 aa14.92□□□□□ -0.02
USP28-209ENST00000540925 A0A0A0MRY4 1105 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 CHURC1-FNTBB4DL54 471 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 MDM4O15151 490 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 HOXA6P31267 233 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 EIF2DP41214 584 aaKnown RBP14.91□□□□□ -0.02
USP28-209ENST00000540925 MTIF2P46199 727 aaKnown RBP14.91□□□□□ -0.02
USP28-209ENST00000540925 MESP2Q0VG99 397 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 EXOC3L4Q17RC7 722 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 CDKAL1Q5VV42 579 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 PMF1Q6P1K2 205 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 FAM114A1Q8IWE2 563 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 ETFBKMTQ8IXQ9 262 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 ARHGAP18Q8N392 663 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 SHC3Q92529 594 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 FAM81BQ96LP2 452 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 CDK5RAP1Q96SZ6 601 aaKnown RBP14.91□□□□□ -0.02
USP28-209ENST00000540925 NDST4Q9H3R1 872 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 SEMA4AQ9H3S1 761 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 SAMSN1Q9NSI8 373 aaKnown RBP14.91□□□□□ -0.02
USP28-209ENST00000540925 ZSCAN32Q9NX65 697 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 DNMT3LQ9UJW3 386 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 AJAP1Q9UKB5 411 aaPredicted RBP14.91□□□□□ -0.02
USP28-209ENST00000540925 NUDT5Q9UKK9 219 aa14.91□□□□□ -0.02
USP28-209ENST00000540925 DMXL1Q9Y485 3027 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 MYOFQ9NZM1 2061 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 GOLGA6L22H0YM25 854 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 HOXC11O43248 304 aaPredicted RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 STC2O76061 302 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 MBD3O95983 291 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 GPD2P43304 727 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 CXCL12P48061 93 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 YWHAGP61981 247 aaKnown RBP eCLIP14.9□□□□□ -0.02
USP28-209ENST00000540925 ADIGQ0VDE8 80 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 TPD52L1Q16890 204 aaPredicted RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 FBXO43Q4G163 708 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 VWA3BQ502W6 1294 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 C10orf120Q5SQS8 335 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 LY6G5CQ5SRR4 150 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 ZC3H14Q6PJT7 736 aaKnown RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 C12orf40Q86WS4 652 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 NDRG1Q92597 394 aaKnown RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 SECISBP2LQ93073 1101 aaKnown RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 NKD2Q969F2 451 aaPredicted RBP14.9□□□□□ -0.02
USP28-209ENST00000540925 P2RY11Q96G91 374 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 TUBGCP2Q9BSJ2 902 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 NACA2Q9H009 215 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 CNGB3Q9NQW8 809 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 SH3BP1Q9Y3L3 701 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 GPR179Q6PRD1 2367 aa14.9□□□□□ -0.02
USP28-209ENST00000540925 OTOGLQ3ZCN5 2332 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 YJEFN3A6XGL0 299 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 KCNJ18B7U540 433 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 E7ENQ6 273 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 K7EQS6 105 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 M0QYV0 167 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 GFRA3O60609 400 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 RNF40O75150 1001 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 ADH1CP00326 375 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 KLKB1P03952 638 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 IRF1P10914 325 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 RALAP11233 206 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 ADH5P11766 374 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 EEF1GP26641 437 aaKnown RBP14.89□□□□□ -0.03
USP28-209ENST00000540925 HOXC13P31276 330 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 SLC6A11P48066 632 aa14.89□□□□□ -0.03
USP28-209ENST00000540925 MFAP3P55082 362 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms