RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SPATA2Q9UM82 520 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 CLTCL1P53675 1640 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 M0QYT0 321 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NPTXRO95502 500 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TALDO1P37837 337 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TAF6P49848 677 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ATN1P54259 1190 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF177Q13360 481 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 DDX39BQ13838 428 aaKnown RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 SHROOM1Q2M3G4 852 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 TIGD7Q6NT04 549 aaPredicted RBP10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NOTUMQ6P988 496 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RNF181Q9P0P0 153 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 RPS6KB2Q9UBS0 482 aa10.25□□□□□ -0.77
COL4A6-208ENST00000538570 NCF1BA6NI72 391 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 NCF1CA8MVU1 366 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 NR5A2O00482 541 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TNFRSF21O75509 655 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 KLHL18O94889 574 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 NCF1P14598 390 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TUBA4AP68366 448 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CDH18Q13634 790 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TAF2Q6P1X5 1199 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RNF19BQ6ZMZ0 732 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TSHZ1Q6ZSZ6 1077 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SPRTNQ9H040 489 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ANKEF1Q9NU02 776 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PRR12Q9ULL5 1215 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 LRCH1Q9Y2L9 728 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 UBOX5O94941 541 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 BCL10O95999 233 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ITGB3P05106 788 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ATP6AP1LQ52LC2 224 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SLC44A2Q8IWA5 706 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 MYO1HQ8N1T3 1032 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 L2HGDHQ9H9P8 463 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 COPS7BQ9H9Q2 264 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 DNAJC16Q9Y2G8 782 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PPP1R3GB7ZBB8 358 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 HBP1O60381 514 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 UPP2O95045 317 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CDC25CP30307 473 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SLC11A2P49281 568 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ROR2Q01974 943 aaKnown RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 C1DQ13901 141 aaKnown RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PDK2Q15119 407 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SKA1Q96BD8 255 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CENPTQ96BT3 561 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 OLFM1Q99784 485 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RAD18Q9NS91 495 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 IARS2Q9NSE4 1012 aaKnown RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CHORDC1Q9UHD1 332 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF609O15014 1411 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CCDC162PA2VCL2 907 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 FKBP6O75344 327 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ODC1P11926 461 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 POU1F1P28069 291 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 GUCA1AP43080 201 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 NME5P56597 212 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PSMC6P62333 389 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ARHGAP15Q53QZ3 475 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TFDP3Q5H9I0 405 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TMEM63BQ5T3F8 832 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 FAM45BPQ6NSW5 357 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 VPS33AQ96AX1 596 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TMEM120AQ9BXJ8 343 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 MTIF3Q9H2K0 278 aaKnown RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 LRRC40Q9H9A6 602 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RGS18Q9NS28 235 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 INTS13Q9NVM9 706 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 DAGLAQ9Y4D2 1042 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RAD54BQ9Y620 910 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 TRIM64CA6NLI5 447 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 GNB5O14775 395 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 SMNDC1O75940 238 aaKnown RBP eCLIP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 C6orf222P0C671 652 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 KCNMA1Q12791 1236 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 COX10Q12887 443 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CAMK2GQ13555 558 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 POLD3Q15054 466 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 MAPK11Q15759 364 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PREPLQ4J6C6 727 aaPredicted RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 KLHL12Q53G59 568 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 PDPK2PQ6A1A2 396 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RDM1Q8NG50 284 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ERAP1Q9NZ08 941 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ALKQ9UM73 1620 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 NRKQ7Z2Y5 1582 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 CDC42BPAQ5VT25 1732 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 RNF17Q9BXT8 1623 aaKnown RBP10.24□□□□□ -0.77
COL4A6-208ENST00000538570 FAM25AB3EWG3 89 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 FAM25CB3EWG5 89 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 FAM25GB3EWG6 89 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 IDH3BO43837 385 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ATP6V1G1O75348 118 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ZNF682O95780 498 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 AQP5P55064 265 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 AKIRIN2Q53H80 203 aa10.24□□□□□ -0.77
COL4A6-208ENST00000538570 ANKS6Q68DC2 871 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms