RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CFAP221Q4G0U5 840 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 SLC45A4Q5BKX6 768 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 DENND5BQ6ZUT9 1274 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 TMEM130Q8N3G9 435 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 SAP25Q8TEE9 199 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 HPS3Q969F9 1004 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 SLITRK1Q96PX8 696 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 CCNL2Q96S94 520 aaPredicted RBP9.78□□□□□ -0.84
USP28-205ENST00000537706 ESYT1Q9BSJ8 1104 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 LHX5Q9H2C1 402 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 POLD4Q9HCU8 107 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 EVA1BQ9NVM1 165 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 PCDHB1Q9Y5F3 818 aa9.78□□□□□ -0.84
USP28-205ENST00000537706 TRIP11Q15643 1979 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 ZNF840PA6NDX5 716 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 ACP1P24666 158 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 RPA1P27694 616 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 PCSK1P29120 753 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 ANP32AP39687 249 aaKnown RBP9.77□□□□□ -0.85
USP28-205ENST00000537706 PNPLA4P41247 253 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 CDH8P55286 799 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 DAB2P98082 770 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 ADCK5Q3MIX3 580 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 ARL13BQ3SXY8 428 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 TDRD10Q5VZ19 366 aaKnown RBP9.77□□□□□ -0.85
USP28-205ENST00000537706 JADE1Q6IE81 842 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 BLOC1S2Q6QNY1 142 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 VSTM1Q6UX27 236 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 TAS1R3Q7RTX0 852 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 TMEM86AQ8N2M4 240 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 BTBD1Q9H0C5 482 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 BHMT2Q9H2M3 363 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 C6orf106Q9H6K1 298 aaPredicted RBP9.77□□□□□ -0.85
USP28-205ENST00000537706 DDX43Q9NXZ2 648 aaKnown RBP9.77□□□□□ -0.85
USP28-205ENST00000537706 MAGEC2Q9UBF1 373 aaPredicted RBP9.77□□□□□ -0.85
USP28-205ENST00000537706 HCN2Q9UL51 889 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 SSUH2Q9Y2M2 353 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 DOPEY2Q9Y3R5 2298 aa9.77□□□□□ -0.85
USP28-205ENST00000537706 CLEC18AA5D8T8 446 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 KPNA7A9QM74 516 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 NEDD8-MDP1E9PL57 170 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 SLC16A4O15374 487 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 CACNG3O60359 315 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 HUS1O60921 280 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 SEMA4FO95754 770 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 OLFM2O95897 454 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 IGHDP01880 384 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 EPHA8P29322 1005 aaPredicted RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 LINC00303Q3SY05 128 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 IGF2-ASQ6U949 168 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 CLEC18BQ6UXF7 455 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 CLEC18CQ8NCF0 446 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 DUSP9Q99956 384 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 BBS2Q9BXC9 721 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 MKRN2Q9H000 416 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 RNF38Q9H0F5 515 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 NCOA5Q9HCD5 579 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 PLEKHB1Q9UF11 243 aaPredicted RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 DENND4CQ5VZ89 1909 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 OGTO15294 1046 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 HIP1RO75146 1068 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 CDKL5O76039 1030 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 OAS1P00973 400 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 ELAVL4P26378 380 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 PDIA3P30101 505 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 TRAPPC10P48553 1259 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 LIG4P49917 911 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 NCAPHQ15003 741 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 MAPRE1Q15691 268 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 ENOX2Q16206 610 aaKnown RBP9.76□□□□□ -0.85
USP28-205ENST00000537706 LAYNQ6UX15 382 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 SKAP1Q86WV1 359 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 TMEM25Q86YD3 366 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 PDZD8Q8NEN9 1154 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 SGF29Q96ES7 293 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 TIPINQ9BVW5 301 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 NACA2Q9H009 215 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 GTF3C4Q9UKN8 822 aa9.76□□□□□ -0.85
USP28-205ENST00000537706 KNTC1P50748 2209 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 WASH3PC4AMC7 463 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 PRRT4C9JH25 899 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 TYRP14679 529 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 KRT2P35908 639 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 LHX1P48742 406 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 FOXK1P85037 733 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 ARID5AQ03989 594 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 GOLGA8FQ08AF8 430 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 GOLGA8DPQ0D2H9 430 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 ZSCAN1Q8NBB4 408 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 SPATA20Q8TB22 786 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 BIRC7Q96CA5 298 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 GRAMD1AQ96CP6 724 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 TTLL2Q9BWV7 592 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 ABCG4Q9H172 646 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 SLC25A18Q9H1K4 315 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 SGK2Q9HBY8 427 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 ASCL3Q9NQ33 180 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 AASDHPPTQ9NRN7 309 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 DPP3Q9NY33 737 aa9.75□□□□□ -0.85
USP28-205ENST00000537706 LSM7Q9UK45 103 aaKnown RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms