RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 KCNK3O14649 394 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 KLK10O43240 276 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 XPOTO43592 962 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 TULP3O75386 442 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 DEXIO95424 95 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 AFPP02771 609 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 C1SP09871 688 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 CPA1P15085 419 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 GLDCP23378 1020 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 RPL10AP62906 217 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 PPP2R3AQ06190 1150 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 ZBTB6Q15916 424 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 CALCRLQ16602 461 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 LY6G5CQ5SRR4 150 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 BTBD8Q5XKL5 378 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 SDE2Q6IQ49 451 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 LAYNQ6UX15 382 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 Q6ZUG5 572 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 PIK3AP1Q6ZUJ8 805 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 METTL23Q86XA0 190 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 CATSPER3Q86XQ3 398 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 DCP1BQ8IZD4 617 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 FAM177A1Q8N128 213 aaPredicted RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 KIAA1958Q8N8K9 716 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 NAT16Q8N8M0 369 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 C1orf216Q8TAB5 229 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 SNX19Q92543 992 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 ZBTB45Q96K62 511 aaPredicted RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 CNDP2Q96KP4 475 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 ZNF578Q96N58 590 aaPredicted RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 AIFM3Q96NN9 605 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 GABRG3Q99928 467 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.92□□□□□ -1.3
CD44-237ENST00000534082 PLEKHA5Q9HAU0 1116 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 TUFT1Q9NNX1 390 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 TMLHEQ9NVH6 421 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 SMPD4Q9NXE4 827 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 USP36Q9P275 1121 aaKnown RBP6.92□□□□□ -1.3
CD44-237ENST00000534082 DEC1Q9P2X7 70 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 KCNJ14Q9UNX9 436 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 ANKRD6Q9Y2G4 727 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 STARD13Q9Y3M8 1113 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 CPQQ9Y646 472 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 DNHD1Q96M86 4753 aa6.92□□□□□ -1.3
CD44-237ENST00000534082 MYO18AQ92614 2054 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 CSMD1Q96PZ7 3565 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 ANO9A1A5B4 782 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 KCNJ18B7U540 433 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 LAD1O00515 517 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 TRIM24O15164 1050 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 HOXC11O43248 304 aaPredicted RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 PAPSS1O43252 624 aaPredicted RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 MED24O75448 989 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 TOM1L1O75674 476 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 LDOC1O95751 146 aaPredicted RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 HMGB1P09429 215 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 CLTAP09496 248 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 PAX3P23760 479 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 CYP2F1P24903 491 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 TXKP42681 527 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 NPTX2P47972 431 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 GRIA4P48058 902 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 PEX3P56589 373 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 RIPPLY3P57055 190 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 CCT2P78371 535 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 SLC7A9P82251 487 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 TSPY1Q01534 308 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 GAD2Q05329 585 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 SSRP1Q08945 709 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 TEAD4Q15561 434 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 NFE2Q16621 373 aaPredicted RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 SPATA1Q5VX52 437 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 C9orf57Q5W0N0 161 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 WSCD1Q658N2 575 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 GATAD2AQ86YP4 633 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 CCDC116Q8IYX3 515 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 DCBLD1Q8N8Z6 715 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 EXD3Q8N9H8 876 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 PYM1Q9BRP8 204 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 ESYT1Q9BSJ8 1104 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 RPF1Q9H9Y2 349 aaKnown RBP6.91□□□□□ -1.3
CD44-237ENST00000534082 HSPBP1Q9NZL4 362 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 CFAP97Q9P2B7 532 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 ARHGAP28Q9P2N2 729 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 SEPT3Q9UH03 358 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 CLCA2Q9UQC9 943 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 MAP4K5Q9Y4K4 846 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 TMEM131Q92545 1883 aa6.91□□□□□ -1.3
CD44-237ENST00000534082 MYLKQ15746 1914 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 ANAPC1Q9H1A4 1944 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 SPENQ96T58 3664 aaKnown RBP6.9□□□□□ -1.3
CD44-237ENST00000534082 K7ENP7 123 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 CYB561D2O14569 222 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 SUV39H1O43463 412 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 MAN1A2O60476 641 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 NEMFO60524 1076 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 PFKLP17858 780 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 OXTRP30559 389 aa6.9□□□□□ -1.3
CD44-237ENST00000534082 GRIK1P39086 918 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms