RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 YWHAGP61981 247 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS28-216ENST00000533806 ADIGQ0VDE8 80 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 GAB4Q2WGN9 574 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 ZSCAN23Q3MJ62 389 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 CC2D1AQ6P1N0 951 aaPredicted RBP13.63□□□□□ -0.23
VPS28-216ENST00000533806 C1orf228Q6PIY5 440 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 HTR3DQ70Z44 454 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 TMEM110Q86TL2 294 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 SLC47A2Q86VL8 602 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 ARHGAP18Q8N392 663 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 PRSS33Q8NF86 280 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 TTC8Q8TAM2 541 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 FAM3CQ92520 227 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 LSM14BQ9BX40 385 aaKnown RBP13.63□□□□□ -0.23
VPS28-216ENST00000533806 LHX5Q9H2C1 402 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 ECT2Q9H8V3 914 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 LRRC4Q9HBW1 653 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 NUDT5Q9UKK9 219 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 PCDHGC3Q9UN70 934 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 KMT2EQ8IZD2 1858 aa13.63□□□□□ -0.23
VPS28-216ENST00000533806 SMTNL1A8MU46 457 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 F8VZ95 297 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 STK25O00506 426 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 PES1O00541 588 aaKnown RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 THAP12O43422 761 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 GALR2O43603 387 aaPredicted RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 CHRNB1P11230 501 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 RGS7P49802 495 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 KPNA1P52294 538 aaPredicted RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 JAM2P57087 298 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 PTK2Q05397 1052 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 TCF15Q12870 199 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 UBXN2BQ14CS0 331 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 C10orf120Q5SQS8 335 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 FKBP15Q5T1M5 1219 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 BSPRYQ5W0U4 402 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 DTWD2Q8NBA8 298 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 IRGQQ8WZA9 623 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 DDX1Q92499 740 aaKnown RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 ATP2A3Q93084 1043 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 CDK5RAP1Q96SZ6 601 aaKnown RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 PRRX2Q99811 253 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 RTN4Q9NQC3 1192 aaKnown RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 DNMT3LQ9UJW3 386 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 MRPS17Q9Y2R5 130 aaKnown RBP13.62□□□□□ -0.23
VPS28-216ENST00000533806 HCN4Q9Y3Q4 1203 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 DAAM1Q9Y4D1 1078 aa13.62□□□□□ -0.23
VPS28-216ENST00000533806 TRDMT1O14717 391 aaKnown RBP13.61□□□□□ -0.23
VPS28-216ENST00000533806 SLC9A3R1O14745 358 aaPredicted RBP13.61□□□□□ -0.23
VPS28-216ENST00000533806 MDM4O15151 490 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 FBXO21O94952 628 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 FYNP06241 537 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 TPM2P07951 284 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 RALAP11233 206 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 LCP1P13796 627 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CYP11B1P15538 503 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CDK11BP21127 795 aaKnown RBP13.61□□□□□ -0.23
VPS28-216ENST00000533806 GJA4P35212 333 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 USP8P40818 1118 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 IFNAR2P48551 515 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 BPIFB4P59827 614 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 RAPGEF1Q13905 1077 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CCINQ13939 588 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 SYCP1Q15431 976 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 TMEM196Q5HYL7 178 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 RHBDF2Q6PJF5 856 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 MAMSTRQ6ZN01 415 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 Q6ZNB5 142 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 TADA2BQ86TJ2 420 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 SCUBE3Q8IX30 993 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 SIX6OS1Q8N1H7 587 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CPA6Q8N4T0 437 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 ANKRD20A12PQ8NF67 263 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CLEC4CQ8WTT0 213 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 OTUB2Q96DC9 234 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 CBX8Q9HC52 389 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 FBRSL1Q9HCM7 1045 aaKnown RBP13.61□□□□□ -0.23
VPS28-216ENST00000533806 FAM207AQ9NSI2 230 aaPredicted RBP13.61□□□□□ -0.23
VPS28-216ENST00000533806 TBC1D14Q9P2M4 693 aa13.61□□□□□ -0.23
VPS28-216ENST00000533806 TICRRQ7Z2Z1 1910 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 SCAMP3O14828 347 aaKnown RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 TEX33O43247 280 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 PAPSS1O43252 624 aaPredicted RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 STC2O76061 302 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 NFATC1O95644 943 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 CAVIN2O95810 425 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 KLKB1P03952 638 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 CYP17A1P05093 508 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 CDH5P33151 784 aaPredicted RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 MAGEA9P43362 315 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 ACADSBP45954 432 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 UBXN1Q04323 297 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 PDCLQ13371 301 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 DHCR24Q15392 516 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 NAIF1Q69YI7 327 aaPredicted RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 BEND5Q7L4P6 421 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 BBS7Q8IWZ6 715 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 MAML2Q8IZL2 1156 aaPredicted RBP13.6□□□□□ -0.23
VPS28-216ENST00000533806 TTC16Q8NEE8 873 aa13.6□□□□□ -0.23
VPS28-216ENST00000533806 ABCC13Q9NSE7 274 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms