RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ASB2Q96Q27 587 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 AS3MTQ9HBK9 375 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 GAR1Q9NY12 217 aaKnown RBP5.56□□□□□ -1.52
CD44-223ENST00000526553 MGAT4CQ9UBM8 478 aa5.56□□□□□ -1.52
CD44-223ENST00000526553 TCRBV5S1A1TA0A578 114 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 MT-CO3P00414 261 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 CELA2AP08217 269 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 APEHP13798 732 aaKnown RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 TNFSF4P23510 183 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 ADRA1DP25100 572 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 ALDH5A1P51649 535 aaPredicted RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 AK2P54819 239 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 EIF4A1P60842 406 aaKnown RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 SRSF4Q08170 494 aaKnown RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 PICALMQ13492 652 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 PMS2P11Q13670 270 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 FAM187BQ17R55 369 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 FAXCQ5TGI0 409 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 MRNIPQ6NTE8 343 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 HIBCHQ6NVY1 386 aaPredicted RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 CRTC1Q6UUV9 634 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 ZNF66Q6ZN08 573 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 OR2C3Q8N628 320 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 C11orf44Q8N8P7 122 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 PNPLA1Q8N8W4 532 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 PNLDC1Q8NA58 520 aaKnown RBP5.55□□□□□ -1.52
CD44-223ENST00000526553 ADAMTS18Q8TE60 1221 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 VPS50Q96JG6 964 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 LPAR3Q9UBY5 353 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 PHTF1Q9UMS5 762 aa5.55□□□□□ -1.52
CD44-223ENST00000526553 COQ9O75208 318 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 FGF18O76093 207 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 WDR47O94967 919 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 TMEM225BP0DP42 221 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 ARP10275 920 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 IDEP14735 1019 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 MST1P26927 711 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 GABRB3P28472 473 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 GPS1Q13098 491 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 FHL3Q13643 280 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 ACOX1Q15067 660 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 ARL13BQ3SXY8 428 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 FAM209BQ5JX69 171 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 ABLIM2Q6H8Q1 611 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 KIAA0408Q6ZU52 694 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 FSTL5Q8N475 847 aaPredicted RBP5.54□□□□□ -1.52
CD44-223ENST00000526553 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.54□□□□□ -1.52
CD44-223ENST00000526553 C8orf58Q8NAV2 365 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 SUN3Q8TAQ9 357 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 SNX27Q96L92 541 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 RIPOR3Q96MK2 946 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 WDR24Q96S15 920 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 GDF15Q99988 308 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 GJB4Q9NTQ9 266 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 TMOD4Q9NZQ9 345 aa5.54□□□□□ -1.52
CD44-223ENST00000526553 H3BNC9 293 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 NCK2O43639 380 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 CCNT2O60583 730 aaKnown RBP5.53□□□□□ -1.52
CD44-223ENST00000526553 GCATO75600 419 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 TUBB4AP04350 444 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 EGR1P18146 543 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 COPB1P53618 953 aaKnown RBP5.53□□□□□ -1.52
CD44-223ENST00000526553 TXNL4AP83876 142 aaKnown RBP5.53□□□□□ -1.52
CD44-223ENST00000526553 CFHR3Q02985 330 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 DEUP1Q05D60 604 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 MTAPQ13126 283 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 LARS2Q15031 903 aaKnown RBP5.53□□□□□ -1.52
CD44-223ENST00000526553 SLC5A9Q2M3M2 681 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 SLC35G1Q2M3R5 365 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 IL31Q6EBC2 164 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 CCDC28AQ8IWP9 274 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 C12orf76Q8N812 135 aaPredicted RBP5.53□□□□□ -1.52
CD44-223ENST00000526553 ABHD5Q8WTS1 349 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 DDB2Q92466 427 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 CCDC17Q96LX7 622 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 MAN2B2Q9Y2E5 1009 aa5.53□□□□□ -1.52
CD44-223ENST00000526553 OR2W5A6NFC9 320 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 CBFA2T3O75081 653 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 CYP2A6P11509 494 aaPredicted RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 HARSP12081 509 aaKnown RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 EPHB2P29323 1055 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 NEK3P51956 506 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 DGKQP52824 942 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 EZH2Q15910 746 aaKnown RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 IZUMO3Q5VZ72 239 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 ZKSCAN2Q63HK3 967 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 TMEM65Q6PI78 240 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 TXLNBQ8N3L3 684 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 MAFAQ8NHW3 353 aaPredicted RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 PARD3BQ8TEW8 1205 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 EDC3Q96F86 508 aaKnown RBP5.52□□□□□ -1.53
CD44-223ENST00000526553 CCDC138Q96M89 665 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 MYD88Q99836 296 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 ASAP1Q9ULH1 1129 aa5.52□□□□□ -1.53
CD44-223ENST00000526553 TMEM232C9JQI7 657 aa5.51□□□□□ -1.53
CD44-223ENST00000526553 PPP6CO00743 305 aa5.51□□□□□ -1.53
CD44-223ENST00000526553 NDST3O95803 873 aa5.51□□□□□ -1.53
CD44-223ENST00000526553 GPC5P78333 572 aa5.51□□□□□ -1.53
CD44-223ENST00000526553 AASDHQ4L235 1098 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms