RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 IQCDQ96DY2 449 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 ZDHHC12Q96GR4 267 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 PRR11Q96HE9 360 aaPredicted RBP4.8□□□□□ -1.64
CD44-217ENST00000525348 ZNF668Q96K58 619 aaPredicted RBP4.8□□□□□ -1.64
CD44-217ENST00000525348 FAM227BQ96M60 508 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 EFHD1Q9BUP0 239 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 PNPLA8Q9NP80 782 aa4.8□□□□□ -1.64
CD44-217ENST00000525348 COL15A1P39059 1388 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 WDR17Q8IZU2 1322 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 A0A1W2PPC4 97 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 A8MVJ9 347 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 BTBD19C9JJ37 291 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 UBE2Q2LH0YL09 131 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 FOXN3O00409 490 aaPredicted RBP4.79□□□□□ -1.64
CD44-217ENST00000525348 CA12O43570 354 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 TMPRSS11DO60235 418 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 PRAMEF2O60811 474 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 GCATO75600 419 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 BCAR3O75815 825 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 ARP10275 920 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 TRIM27P14373 513 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 YY1P25490 414 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 RBL1P28749 1068 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 ATICP31939 592 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 ETFDHQ16134 617 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 CERKLQ49MI3 558 aaPredicted RBP4.79□□□□□ -1.64
CD44-217ENST00000525348 MORN5Q5VZ52 161 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 C11orf87Q6NUJ2 197 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 KRT28Q7Z3Y7 464 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 SDR16C5Q8N3Y7 309 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 ATP11CQ8NB49 1132 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 LRRC46Q96FV0 321 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 CCDC17Q96LX7 622 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 TBCBQ99426 244 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 NAA15Q9BXJ9 866 aaKnown RBP4.79□□□□□ -1.64
CD44-217ENST00000525348 PRSS22Q9GZN4 317 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 SNX15Q9NRS6 342 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 TFCP2L1Q9NZI6 479 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 NKX1-2Q9UD57 310 aaPredicted RBP4.79□□□□□ -1.64
CD44-217ENST00000525348 STEAP1Q9UHE8 339 aa4.79□□□□□ -1.64
CD44-217ENST00000525348 SCAF8Q9UPN6 1271 aaKnown RBP4.79□□□□□ -1.64
CD44-217ENST00000525348 CLCA1A8K7I4 914 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 KCNU1A8MYU2 1149 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 H3BNC9 293 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 THAP12O43422 761 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 CBFA2T3O75081 653 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 MBPP02686 304 aaPredicted RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 FGFR2P21802 821 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 EIF4A1P60842 406 aaKnown RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 GPC5P78333 572 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 CFHR3Q02985 330 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 CLCA4Q14CN2 919 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 MZT2AQ6P582 158 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 CRTC1Q6UUV9 634 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 DCDC5Q6ZRR9 648 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 MBD3L2Q8NHZ7 208 aaPredicted RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 SUN3Q8TAQ9 357 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 IGFBPL1Q8WX77 278 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 SMG7Q92540 1137 aaKnown RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 FYTTD1Q96QD9 318 aaKnown RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 SLC25A32Q9H2D1 315 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 HEYLQ9NQ87 328 aaPredicted RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 VPS45Q9NRW7 570 aa4.78□□□□□ -1.64
CD44-217ENST00000525348 GAR1Q9NY12 217 aaKnown RBP4.78□□□□□ -1.64
CD44-217ENST00000525348 CYP2D7A0A087X1C5 515 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 TMEM232C9JQI7 657 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 FCHO1O14526 889 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 AREL1O15033 823 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 KCNQ3O43525 872 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 SNX2O60749 519 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 MYL3P08590 195 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 ATP5F1P24539 256 aaPredicted RBP4.77□□□□□ -1.65
CD44-217ENST00000525348 ADRA1DP25100 572 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 STT3AP46977 705 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 SLC14A1Q13336 389 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 SAFBQ15424 915 aaKnown RBP eCLIP4.77□□□□□ -1.65
CD44-217ENST00000525348 Q4G0T1 1027 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 ABLIM2Q6H8Q1 611 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 MIS18BP1Q6P0N0 1132 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 TMEM65Q6PI78 240 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 ZNF813Q6ZN06 617 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 CNGA4Q8IV77 575 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 CCDC33Q8N5R6 958 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 C12orf76Q8N812 135 aaPredicted RBP4.77□□□□□ -1.65
CD44-217ENST00000525348 PNPLA1Q8N8W4 532 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 SCARB1Q8WTV0 552 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 GDF15Q99988 308 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 SPRTNQ9H040 489 aaPredicted RBP4.77□□□□□ -1.65
CD44-217ENST00000525348 SAP30LQ9HAJ7 183 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 NRIP3Q9NQ35 241 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 MYO1AQ9UBC5 1043 aa4.77□□□□□ -1.65
CD44-217ENST00000525348 CACNA1IQ9P0X4 2223 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 E5RJQ4 531 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 KIF3BO15066 747 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 NCK2O43639 380 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 WDR47O94967 919 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 TOP3BO95985 862 aaKnown RBP4.76□□□□□ -1.65
CD44-217ENST00000525348 CD19P15391 556 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 PHKG2P15735 406 aa4.76□□□□□ -1.65
CD44-217ENST00000525348 GNALP38405 381 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms