RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-208ENST00000521037 CXCL12P48061 93 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 PXNP49023 591 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 CCR3P51677 355 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 ZNF143P52747 638 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 ITGA1P56199 1179 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 KRT17Q04695 432 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 PPFIA1Q13136 1202 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 DDX10Q13206 875 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 HLTFQ14527 1009 aaKnown RBP eCLIP4.35□□□□□ -1.717e-9■■■■■ 33
VPS13B-208ENST00000521037 PLCB4Q15147 1175 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 NONOQ15233 471 aaKnown RBP eCLIP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 USH1GQ495M9 461 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 CRB2Q5IJ48 1285 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 SPOUT1Q5T280 376 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 UTP14CQ5TAP6 766 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 TANGO2Q6ICL3 276 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 GLB1LQ6UWU2 654 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 CLEC18BQ6UXF7 455 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 ZNF852Q6ZMS4 543 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 SPATA31D4Q6ZUB0 917 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 GET4Q7L5D6 327 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 MARCH9Q86YJ5 346 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 SPEM1Q8N4L4 309 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 LINC01465Q8N7H1 131 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 CLEC18CQ8NCF0 446 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 LSM14AQ8ND56 463 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 SMG7Q92540 1137 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 KISS1RQ969F8 398 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 RSPRY1Q96DX4 576 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 RPS6KC1Q96S38 1066 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 MRPL4Q9BYD3 311 aaKnown RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 UBA5Q9GZZ9 404 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 FAM49AQ9H0Q0 323 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 ATP6V0A4Q9HBG4 840 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 VPS45Q9NRW7 570 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 GULP1Q9UBP9 304 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 NUDT5Q9UKK9 219 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 RAB23Q9ULC3 237 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 F5P12259 2224 aa4.35□□□□□ -1.71
VPS13B-208ENST00000521037 MUC22E2RYF6 1773 aaPredicted RBP4.35□□□□□ -1.71
VPS13B-208ENST00000521037 PCNX2A6NKB5 2137 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ASCC3Q8N3C0 2202 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SPTAN1Q13813 2472 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 A0A0U1RQF3 1178 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SMIM35A0A1B0GVV1 85 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 C7orf72A4D263 438 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 C9orf118A6NHY6 69 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 DDX3XO00571 662 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 DCLK1O15075 740 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 TGM5O43548 720 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ECI2O75521 394 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 C1RP00736 705 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 NTRK1P04629 796 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 GOLGA8HP0CJ92 632 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 HSPD1P10809 573 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 NAT2P11245 290 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 TRIM27P14373 513 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 MARK3P27448 753 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 HOXA13P31271 388 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 TCF7P36402 384 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 IRX4P78413 519 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 MCL1Q07820 350 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SLFN5Q08AF3 891 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 KLF10Q13118 480 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 IKQ13123 557 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 BIRC2Q13490 618 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 GIT2Q14161 759 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SLC5A9Q2M3M2 681 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 QRICH1Q2TAL8 776 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ARHGEF16Q5VV41 709 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 HEATR6Q6AI08 1181 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 BORAQ6PGQ7 559 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 KCNV1Q6PIU1 500 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 GRASPQ7Z6J2 395 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 AACSQ86V21 672 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 RAVER1Q8IY67 606 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 IFNL3Q8IZI9 196 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ZNF444Q8N0Y2 327 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 PPM1KQ8N3J5 372 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 KLHL6Q8WZ60 621 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 EXOC2Q96KP1 924 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 LRRC3BQ96PB8 259 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SEC62Q99442 399 aaKnown RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 VPS11Q9H270 941 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 JMJD4Q9H9V9 463 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 MLXIPQ9HAP2 919 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 IL1RAPL2Q9NP60 686 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 TRPV5Q9NQA5 729 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 CHST12Q9NRB3 414 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 TBC1D13Q9NVG8 400 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 PAG1Q9NWQ8 432 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 STX8Q9UNK0 236 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ZFP37Q9Y6Q3 630 aaPredicted RBP4.34□□□□□ -1.71
VPS13B-208ENST00000521037 ABCB11O95342 1321 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 PCDH15Q96QU1 1955 aa4.34□□□□□ -1.71
VPS13B-208ENST00000521037 SDK1Q7Z5N4 2213 aa4.34□□□□□ -1.72
VPS13B-208ENST00000521037 NOTCH2Q04721 2471 aa4.33□□□□□ -1.72
VPS13B-208ENST00000521037 ACACAQ13085 2346 aa4.33□□□□□ -1.72
VPS13B-208ENST00000521037 ZMYM2Q9UBW7 1377 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms