RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NPLOC4Q8TAT6 608 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 STMN2Q93045 179 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 APOL2Q9BQE5 337 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 UBN1Q9NPG3 1134 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 TXLNGQ9NUQ3 528 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 ZFATQ9P243 1243 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 CACNG4Q9UBN1 327 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 PHTF1Q9UMS5 762 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 MYH9P35579 1960 aaKnown RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 UBOX5O94941 541 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 RPSAP08865 295 aaKnown RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 PCSK1P29120 753 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 GJA5P36382 358 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 EFTUD2Q15029 972 aaKnown RBP eCLIP10.54□□□□□ -0.72
MCF2-209ENST00000520602 SIX1Q15475 284 aaPredicted RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 ZNF792Q3KQV3 632 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 CYP4X1Q8N118 509 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 NDUFAF2Q8N183 169 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 SEC14L1Q92503 715 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 RAB3IPQ96QF0 476 aaPredicted RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 SLC40A1Q9NP59 571 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 PPARGC1AQ9UBK2 798 aaKnown RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 ZFP69BQ9UJL9 534 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 PDE4DIPQ5VU43 2346 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 IGKV6-21A0A0C4DH24 114 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 A0A1W2PPM1 405 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 DCTN3O75935 186 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 PYGBP11216 843 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 TYK2P29597 1187 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 RPA3P35244 121 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 ARL1P40616 181 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 ARFIP2P53365 341 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 ATXN1P54253 815 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 KBTBD12Q3ZCT8 623 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 SPOUT1Q5T280 376 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 ANKRD23Q86SG2 305 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 GRAMD1AQ96CP6 724 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 L3MBTL3Q96JM7 780 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 SENP8Q96LD8 212 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 MAGEB18Q96M61 343 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 TBCBQ99426 244 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 LBHD1Q9BQE6 289 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 SYT15Q9BQS2 421 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 TSPYL2Q9H2G4 693 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 RNF39Q9H2S5 420 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 NRXN2Q9P2S2 1712 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 SOCS7O14512 581 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 SNRPAP09012 282 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 PCK1P35558 622 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 RABGGTBP53611 331 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 PDK1Q15118 436 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 UNC93AQ86WB7 457 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 ANKRD52Q8NB46 1076 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 ARMC2Q8NEN0 867 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 CLEC4CQ8WTT0 213 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 NKD2Q969F2 451 aaPredicted RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 EPAS1Q99814 870 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 C16orf70Q9BSU1 422 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 TSSK1BQ9BXA7 367 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 SLC24A2Q9UI40 661 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 CYTH4Q9UIA0 394 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 G3BP2Q9UN86 482 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 CDY2AQ9Y6F7 541 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 DNAJC25-GNG10A0A024R161 153 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 SMAPO00193 183 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 AKR1A1P14550 325 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 PTPN1P18031 435 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 SCNN1GP51170 649 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 ZNF132P52740 706 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 PDCD7Q8N8D1 485 aaKnown RBP10.53□□□□□ -0.72
MCF2-209ENST00000520602 B3GALNT2Q8NCR0 500 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 TCP10LQ8TDR4 215 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 FNIP1Q8TF40 1166 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 STAMBPL1Q96FJ0 436 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 IPPQ9Y573 584 aa10.53□□□□□ -0.72
MCF2-209ENST00000520602 ALOX15BO15296 676 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 USP17L7P0C7H9 530 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 ADRA1DP25100 572 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 HNRNPH1P31943 449 aaKnown RBP10.52□□□□□ -0.72
MCF2-209ENST00000520602 CRADDP78560 199 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 FAAP100Q0VG06 881 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 PACS2Q86VP3 889 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 SPATA2LQ8IUW3 424 aaPredicted RBP10.52□□□□□ -0.72
MCF2-209ENST00000520602 TRIM42Q8IWZ5 723 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 PARP9Q8IXQ6 854 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 CPT1BQ92523 772 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 CENPTQ96BT3 561 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 ULBP1Q9BZM6 244 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 WDCPQ9H6R7 721 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 PCDH18Q9HCL0 1135 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 ABCF3Q9NUQ8 709 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 UBP1Q9NZI7 540 aa10.52□□□□□ -0.72
MCF2-209ENST00000520602 ZBTB42B2RXF5 422 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 H0Y3Z8 333 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 PAPSS1O43252 624 aaPredicted RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 ESRRAP11474 423 aaPredicted RBP10.52□□□□□ -0.73
MCF2-209ENST00000520602 GOT1P17174 413 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 GBE1Q04446 702 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 GAD2Q05329 585 aa10.52□□□□□ -0.73
MCF2-209ENST00000520602 FNBP1LQ5T0N5 605 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms