RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 STRA8Q7Z7C7 330 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 B4GALNT2Q8NHY0 566 aa12.1□□□□□ -0.47
SYNPO-204ENST00000519664 IARS2Q9NSE4 1012 aaKnown RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 WARS2Q9UGM6 360 aaKnown RBP12.1□□□□□ -0.47
SYNPO-204ENST00000519664 CNTRLQ7Z7A1 2325 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 UMODL1Q5DID0 1318 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 AVILO75366 819 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 CCDC130P13994 396 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 NUDT2P50583 147 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 NME5P56597 212 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 NOMO3P69849 1222 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 ITGA9Q13797 1035 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 MREGQ8N565 214 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF75CPQ92670 426 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-204ENST00000519664 FMN2Q9NZ56 1722 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 C2CD2LO14523 706 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 ATP6V1G2O95670 118 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 KDELR1P24390 212 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 THPOP40225 353 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 SERPINB4P48594 390 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 BCAT1P54687 386 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 PTK6Q13882 451 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 POU6F1Q14863 301 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 PDK2Q15119 407 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 C9orf131Q5VYM1 1079 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 MFN1Q8IWA4 741 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 ASIC4Q96FT7 647 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 SLC24A2Q9UI40 661 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 PLSCR1O15162 318 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 ZNF862O60290 1169 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 POMCP01189 267 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 DNAL1Q4LDG9 190 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 MFSD14CQ5VZR4 134 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 LRRC57Q8N9N7 239 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 EME1Q96AY2 570 aa12.09□□□□□ -0.47
SYNPO-204ENST00000519664 SRPK1Q96SB4 655 aaKnown RBP12.09□□□□□ -0.47
SYNPO-204ENST00000519664 C12orf65Q9H3J6 166 aaKnown RBP12.09□□□□□ -0.47
SYNPO-204ENST00000519664 WDR27A2RRH5 827 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ATP6V1B1P15313 513 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 RPL22P35268 128 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CSE1LP55060 971 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CAPRIN1Q14444 709 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 FKBP1CQ5VVH2 108 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 TTC27Q6P3X3 843 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 YTHDF3Q7Z739 585 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 KATNAL2Q8IYT4 538 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 DEFB106AQ8N104 65 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 URGCPQ8TCY9 931 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CDCA5Q96FF9 252 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CCDC90BQ9GZT6 254 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ING2Q9H160 280 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ROBO3Q96MS0 1386 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 MED1Q15648 1581 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 FAM208AQ9UK61 1670 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 RRN3P2A6NIE6 340 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 SMAPO00193 183 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 SUPT7LO94864 414 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CETPP11597 493 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 EIF4BP23588 611 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PHEXP78562 749 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 TWF1Q12792 350 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 DPYSL3Q14195 570 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 GRIK4Q16099 956 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 DLK2Q6UY11 383 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 JOSD2Q8TAC2 188 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 BLOC1S5Q8TDH9 187 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CMTM5Q96DZ9 223 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 SLITRK1Q96PX8 696 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PARK7Q99497 189 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 MYLK2Q9H1R3 596 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 OLA1Q9NTK5 396 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 COL1A1P02452 1464 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 O00370 1275 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CREB1P16220 341 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 MGAT1P26572 445 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ADORA2AP29274 412 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PSEN1P49768 467 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 COPAP53621 1224 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 JAG1P78504 1218 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ZNF268Q14587 947 aaPredicted RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 UGP2Q16851 508 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 IMPG1Q17R60 797 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PRAMEF19Q5SWL8 479 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ARHGAP22Q7Z5H3 698 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CHSY1Q86X52 802 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 ZCCHC9Q8N567 271 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 LRRC19Q9H756 370 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 KIAA1257Q9ULG3 409 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PPME1Q9Y570 386 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 NCANO14594 1321 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 A0A1W2PPM1 405 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 DDX3YO15523 660 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 KLHL2O95198 593 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 IRF1P10914 325 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 PDAP1Q13442 181 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 C10orf120Q5SQS8 335 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 RARS2Q5T160 578 aaKnown RBP12.08□□□□□ -0.48
SYNPO-204ENST00000519664 NAPEPLDQ6IQ20 393 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CATSPERGQ6ZRH7 1159 aa12.08□□□□□ -0.48
SYNPO-204ENST00000519664 CD302Q8IX05 232 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms