RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CHUKO15111 745 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 FAM155BO75949 473 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 UBOX5O94941 541 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 MT-ND3P03897 115 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ALADP13716 330 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 KRT4P19013 534 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ELK3P41970 407 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 TAF6P49848 677 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 HDAC4P56524 1084 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 SLC8A3P57103 927 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 GAD2Q05329 585 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 MFSD10Q14728 455 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 SETDB1Q15047 1291 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 SNCBQ16143 134 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 LGSNQ5TDP6 509 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 BZW1Q7L1Q6 419 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 STRADAQ7RTN6 431 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 LIMS2Q7Z4I7 341 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 C4orf33Q8N1A6 199 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 NME8Q8N427 588 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 APPL2Q8NEU8 664 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 PCDH19Q8TAB3 1148 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 ZNF398Q8TD17 642 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 OSMRQ99650 979 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 C11orf84Q9BUA3 381 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 NRDE2Q9H7Z3 1164 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 RAB6BQ9NRW1 208 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 RCOR3Q9P2K3 495 aaPredicted RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 PHTF1Q9UMS5 762 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 GNEQ9Y223 722 aaKnown RBP15.45■□□□□ 0.06
NUP54-217ENST00000514987 GINS2Q9Y248 185 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 USH1CQ9Y6N9 552 aa15.45■□□□□ 0.06
NUP54-217ENST00000514987 SCN1AP35498 2009 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 TRIP11Q15643 1979 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 SMIM28A0A1B0GU29 152 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 A0A1W2PPM1 405 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 PPEF2O14830 753 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 EDF1O60869 148 aaKnown RBP15.44■□□□□ 0.06
NUP54-217ENST00000514987 BANF1O75531 89 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 GCATO75600 419 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 DCTN3O75935 186 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 INHBAP08476 426 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 CPT1AP50416 773 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 ADCY1Q08828 1119 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 FAM133BQ5BKY9 247 aaKnown RBP15.44■□□□□ 0.06
NUP54-217ENST00000514987 SPDYAQ5MJ70 313 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 SPRYD7Q5W111 196 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 NPLOC4Q8TAT6 608 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 MZB1Q8WU39 189 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 SLC44A1Q8WWI5 657 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 C18orf25Q96B23 403 aaPredicted RBP15.44■□□□□ 0.06
NUP54-217ENST00000514987 WDR83Q9BRX9 315 aaKnown RBP15.44■□□□□ 0.06
NUP54-217ENST00000514987 KATNAL1Q9BW62 490 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 VPS11Q9H270 941 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 ETNK2Q9NVF9 386 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.44■□□□□ 0.06
NUP54-217ENST00000514987 CHMP2BQ9UQN3 213 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 Q9Y3F1 56 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 HEY1Q9Y5J3 304 aa15.44■□□□□ 0.06
NUP54-217ENST00000514987 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.44■□□□□ 0.06
NUP54-217ENST00000514987 HACD1B0YJ81 288 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 HAS3O00219 553 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 MGRN1O60291 552 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 HUS1O60921 280 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 GNAT1P11488 350 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 TPSB2P20231 275 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 CYP2F1P24903 491 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 L1CAMP32004 1257 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 PSEN2P49810 448 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 MNAT1P51948 309 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 CRYBB1P53674 252 aaPredicted RBP15.43■□□□□ 0.06
NUP54-217ENST00000514987 YWHAGP61981 247 aaKnown RBP eCLIP15.43■□□□□ 0.06
NUP54-217ENST00000514987 TMEM62Q0P6H9 643 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 RIPK1Q13546 671 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 SNX17Q15036 470 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 TPSAB1Q15661 275 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 SLC45A4Q5BKX6 768 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 SWT1Q5T5J6 900 aaKnown RBP15.43■□□□□ 0.06
NUP54-217ENST00000514987 FYB2Q5VWT5 728 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 CGB2Q6NT52 195 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 LVRNQ6Q4G3 990 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 TOP6BLQ8N6T0 577 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 C7orf31Q8N865 590 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 C2orf69Q8N8R5 385 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 BANPQ8N9N5 519 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 KBTBD7Q8WVZ9 684 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 MRRFQ96E11 262 aaKnown RBP15.43■□□□□ 0.06
NUP54-217ENST00000514987 FERMT1Q9BQL6 677 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 NXF3Q9H4D5 531 aaKnown RBP15.43■□□□□ 0.06
NUP54-217ENST00000514987 ECT2Q9H8V3 914 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 CDHR5Q9HBB8 845 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 ZNF180Q9UJW8 692 aa15.43■□□□□ 0.06
NUP54-217ENST00000514987 TCRBV9S1A1TA0A576 114 aa15.42■□□□□ 0.06
NUP54-217ENST00000514987 KBTBD13C9JR72 458 aa15.42■□□□□ 0.06
NUP54-217ENST00000514987 XPO1O14980 1071 aaKnown RBP15.42■□□□□ 0.06
NUP54-217ENST00000514987 GABBR2O75899 941 aa15.42■□□□□ 0.06
NUP54-217ENST00000514987 WARSP23381 471 aaKnown RBP15.42■□□□□ 0.06
NUP54-217ENST00000514987 RBL1P28749 1068 aa15.42■□□□□ 0.06
NUP54-217ENST00000514987 ADAM17P78536 824 aa15.42■□□□□ 0.06
NUP54-217ENST00000514987 ELF3P78545 371 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms