RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ASIC4Q96FT7 647 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 WDR18Q9BV38 432 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 VPS33BQ9H267 617 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 PARVBQ9HBI1 364 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 CISHQ9NSE2 258 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 ADA2Q9NZK5 511 aa13.59□□□□□ -0.23
TCOF1-213ENST00000514442 CXCL11O14625 94 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ACADSBP45954 432 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 PTK7Q13308 1070 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 KBTBD12Q3ZCT8 623 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 FASTKD1Q53R41 847 aaKnown RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 RBM44Q6ZP01 1051 aaKnown RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 MOB2Q70IA6 237 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 RSAD1Q9HA92 442 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 IRF6O14896 467 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 LCA5LO95447 670 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ACO1P21399 889 aaKnown RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 SLC5A9Q2M3M2 681 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 GRIP2Q9C0E4 1043 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 NEUROG2Q9H2A3 272 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 APPL1Q9UKG1 709 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 FCHO1O14526 889 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 SEC24DO94855 1032 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 MAGEA8P43361 318 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 CDK16Q00536 496 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 APTXQ7Z2E3 356 aaKnown RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 EMC1Q8N766 993 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 TRPM4Q8TD43 1214 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF75CPQ92670 426 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 OXNAD1Q96HP4 312 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ACTL7BQ9Y614 415 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 PRRG1O14668 218 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 TM9SF1O15321 606 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 CBFA2T3O75081 653 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 FOXD4Q12950 439 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ACVR2BQ13705 512 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 GRIK4Q16099 956 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 SLC35C1Q96A29 364 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 SNTG2Q9NY99 539 aa13.58□□□□□ -0.24
TCOF1-213ENST00000514442 AFF4Q9UHB7 1163 aaKnown RBP13.58□□□□□ -0.24
TCOF1-213ENST00000514442 ATRNO75882 1429 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 C3orf70A6NLC5 250 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 DDX3XO00571 662 aaKnown RBP eCLIP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 EPHB6O15197 1021 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PNPLA4P41247 253 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 CDK7P50613 346 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 DRG2P55039 364 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PDK3Q15120 406 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 IL31RAQ8NI17 732 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 SH3TC2Q8TF17 1288 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 DNAJB3Q8WWF6 145 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PTPRN2Q92932 1015 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ABHD8Q96I13 439 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 KLHL25Q9H0H3 589 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 KCNMB3Q9NPA1 279 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 NINJ2Q9NZG7 142 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 UMODL1Q5DID0 1318 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ZC3H4Q9UPT8 1303 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ANKRD63C9JTQ0 380 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ADCYAP1R1P41586 468 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 OAZ1P54368 228 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PDAP1Q13442 181 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 CCDC60Q8IWA6 550 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 OR6Y1Q8NGX8 325 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PPP1R36Q96LQ0 422 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ING2Q9H160 280 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PLGRKTQ9HBL7 147 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 TIMMDC1Q9NPL8 285 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 GPRC5DQ9NZD1 345 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 MROH7Q68CQ1 1323 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 M0QYT0 321 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 GJB6O95452 261 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 KCNA4P22459 653 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ECHDC2Q86YB7 292 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 WDR49Q8IV35 697 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 DCP1BQ8IZD4 617 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 TERB1Q8NA31 727 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 UCMAQ8WVF2 138 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 BAP1Q92560 729 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 COPS5Q92905 334 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 FAM111AQ96PZ2 611 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 MRPS26Q9BYN8 205 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PAIP1Q9H074 479 aaKnown RBP13.57□□□□□ -0.24
TCOF1-213ENST00000514442 CYB561D2O14569 222 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 KRT8P05787 483 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 CYP3A4P08684 503 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 AKAP5P24588 427 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 NNMTP40261 264 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 DMPKQ09013 629 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ATP1A4Q13733 1029 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF398Q8TD17 642 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PCDHB7Q9Y5E2 793 aa13.57□□□□□ -0.24
TCOF1-213ENST00000514442 PGM3O95394 542 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ETFBP38117 255 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 FLOT2Q14254 428 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 CHI3L2Q15782 390 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 ANO4Q32M45 955 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 IL31Q6EBC2 164 aa13.56□□□□□ -0.24
TCOF1-213ENST00000514442 IRF2BP1Q8IU81 584 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms