RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 EIF4E1BA6NMX2 242 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 A8MXQ7 604 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 TYRP14679 529 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 ZCCHC9Q8N567 271 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 B3GALNT2Q8NCR0 500 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 SCFD1Q8WVM8 642 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 OVCA2Q8WZ82 227 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 BBS2Q9BXC9 721 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 PANK2Q9BZ23 570 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 PANK4Q9NVE7 773 aa21.54■■□□□ 1.04
SQSTM1-215ENST00000514093 MEI4A8MW99 385 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 TBX18O95935 607 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 DLATP10515 647 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 CD6P30203 668 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 SLC5A3P53794 718 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 TNNC1P63316 161 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 ALCAMQ13740 583 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 SURF1Q15526 300 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 GLRX5Q86SX6 157 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 WDR49Q8IV35 697 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 HPS3Q969F9 1004 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 TOE1Q96GM8 510 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 CRELD1Q96HD1 420 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 TMX3Q96JJ7 454 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 CLIC6Q96NY7 704 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 XPO6Q96QU8 1125 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 GPR174Q9BXC1 333 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 PRDM16Q9HAZ2 1276 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 NXF1Q9UBU9 619 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 CLIC4Q9Y696 253 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 PTPRBP23467 1997 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 APC2O95996 2303 aa21.53■■□□□ 1.04
SQSTM1-215ENST00000514093 ACACAQ13085 2346 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 A0A1B0GTW7 788 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 GOLGA8CPA6NN73 597 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 ATXN1LP0C7T5 689 aaKnown RBP21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 TNNI1P19237 187 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 SNX30Q5VWJ9 437 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 LARP1BQ659C4 914 aaKnown RBP21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 BHMTQ93088 406 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 COL26A1Q96A83 441 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 MED10Q9BTT4 135 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 ZDHHC5Q9C0B5 715 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 GAREM1Q9H706 876 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 HSPBP1Q9NZL4 362 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 BPTFQ12830 3046 aa21.52■■□□□ 1.04
SQSTM1-215ENST00000514093 FRMD3A2A2Y4 597 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 KIAA0391O15091 583 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 CACNG3O60359 315 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 GREM1O60565 184 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 NCAM1P13591 858 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 CDH8P55286 799 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 BNC1Q01954 994 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 CYP4F3Q08477 520 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 PAQR9Q6ZVX9 377 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 HTR3DQ70Z44 454 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 TMPRSS7Q7RTY8 843 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 DNASE2BQ8WZ79 361 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 CCDC127Q96BQ5 260 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 TOR4AQ9NXH8 423 aa21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 WSB2Q9NYS7 404 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 KIAA1522Q9P206 1035 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 FBXO2Q9UK22 296 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 FNDC3AQ9Y2H6 1198 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-215ENST00000514093 CILPO75339 1184 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 CISD3P0C7P0 127 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 ZDHHC11BP0C7U3 371 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 HOXD13P35453 343 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 TUBP50607 506 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 MYL6P60660 151 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 FAM35AQ86V20 835 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 ELMO3Q96BJ8 720 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 DUSP9Q99956 384 aaKnown RBP21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 SCUBE2Q9NQ36 999 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 TM7SF3Q9NS93 570 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 PLK2Q9NYY3 685 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 IL37Q9NZH6 218 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 WDR35Q9P2L0 1181 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 SMC3Q9UQE7 1217 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 STON1Q9Y6Q2 735 aa21.5■■□□□ 1.03
SQSTM1-215ENST00000514093 TRABD2BA6NFA1 517 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 KCNJ18B7U540 433 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 TLR5O60602 858 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 FAM163BP0C2L3 166 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 DGKGP49619 791 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 HLA-BQ31612 363 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 FUT11Q495W5 492 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 DCAF12L1Q5VU92 463 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 BRAPQ7Z569 592 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 RHBDD1Q8TEB9 315 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 ZNF516Q92618 1163 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 KLF16Q9BXK1 252 aaPredicted RBP21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 SMYD3Q9H7B4 428 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 DMAP1Q9NPF5 467 aaPredicted RBP21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 ITM2CQ9NQX7 267 aa21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 URB1O60287 2271 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-215ENST00000514093 A0A087X0B3 334 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 FAM149AA5PLN7 773 aa21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 CD2BP2O95400 341 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-215ENST00000514093 STAT6P42226 847 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms