RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SPATA31A1Q5TZJ5 1347 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SPATA31D1Q6ZQQ2 1576 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 GSG1L2A8MUP6 293 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 APOL3O95236 402 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 WEE2P0C1S8 567 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 COMTP21964 271 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 TBXAS1P24557 533 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 ARF5P84085 180 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 NME3Q13232 169 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 GTF2H3Q13889 308 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 GSTA3Q16772 222 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 TNS4Q8IZW8 715 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 AMER2Q8N7J2 671 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CLHC1Q8NHS4 586 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 GDPD5Q8WTR4 605 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 COX4I2Q96KJ9 171 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 TBATAQ96M53 351 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 ROGDIQ9GZN7 287 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 SIK2Q9H0K1 926 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 IL1RL2Q9HB29 575 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 INTS13Q9NVM9 706 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 CUEDC1Q9NWM3 386 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF624Q9P2J8 865 aaPredicted RBP9□□□□□ -0.97
LIMCH1-218ENST00000513024 MAD2L2Q9UI95 211 aa9□□□□□ -0.97
LIMCH1-218ENST00000513024 HEG1Q9ULI3 1381 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ATMINO43313 823 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 MSCO60682 206 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SEC24AO95486 1093 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 IFNA16P05015 189 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 APOA4P06727 396 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF568Q3ZCX4 644 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 DGKKQ5KSL6 1271 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 WDR93Q6P2C0 686 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 UTS2BQ765I0 119 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 MAGEB5Q9BZ81 275 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 RNPEPL1Q9HAU8 725 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 PCDH12Q9NPG4 1184 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 TIMMDC1Q9NPL8 285 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 FER1L4A9Z1Z3 1794 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 MROH7-TTC4A0A0A0MT08 1334 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 C6orf222P0C671 652 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 AKR1B1P15121 316 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 TYSND1Q2T9J0 566 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 IER5Q5VY09 327 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SLC9A4Q6AI14 798 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 HMBOX1Q6NT76 420 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SRBD1Q8N5C6 995 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 EPS8L3Q8TE67 593 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 RMDN3Q96TC7 470 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 STK33Q9BYT3 514 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ZCWPW1Q9H0M4 648 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 XPO7Q9UIA9 1087 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF221Q9UK13 617 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 CEMIPQ8WUJ3 1361 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 C5orf58C9J3I9 102 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 PDXKO00764 312 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 KPNA6O60684 536 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 RHOBTB3O94955 611 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 DDX5P17844 614 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 IGFBP4P22692 258 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 CHN2P52757 468 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 LRRC74AQ0VAA2 488 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SCARF1Q14162 830 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 KYAT1Q16773 422 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 TIMM50Q3ZCQ8 353 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 USP39Q53GS9 565 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ASB12Q8WXK4 309 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 PRCCQ92733 491 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 EHD1Q9H4M9 534 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 APEX2Q9UBZ4 518 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 AFF4Q9UHB7 1163 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 CIDEBQ9UHD4 219 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 FOXN3O00409 490 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 HUS1O60921 280 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 CYP2B6P20813 491 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 WARSP23381 471 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SLC1A1P43005 524 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ARL4DP49703 201 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SERPINB9P50453 376 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 RCAN1P53805 252 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ST8SIA6P61647 398 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ERVK-24P63145 666 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ITGA9Q13797 1035 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF846Q147U1 533 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SUSD4Q5VX71 490 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 TRIM72Q6ZMU5 477 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 NECAB2Q7Z6G3 386 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 KAZALD1Q96I82 304 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 LXNQ9BS40 222 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 PABPC3Q9H361 631 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 COMMD9Q9P000 198 aa8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 LSM7Q9UK45 103 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 RPH3AQ9Y2J0 694 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-218ENST00000513024 SPATA31A5Q5VU36 1347 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 SPATA31A7Q8IWB4 1347 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 MSR1P21757 451 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 CPT1AP50416 773 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 USP11P51784 963 aa8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 ELF3P78545 371 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-218ENST00000513024 USP4Q13107 963 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms