RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MAP3K7CLP57077 242 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 SRSF5Q13243 272 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 KRT39Q6A163 491 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 C12orf29Q8N999 325 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 ERGIC2Q96RQ1 377 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 SMOQ99835 787 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 NT5C1AQ9BXI3 368 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 NIF3L1Q9GZT8 377 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 NACA2Q9H009 215 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 CYP3A43Q9HB55 503 aa19.01■□□□□ 0.63
SQSTM1-209ENST00000504627 GTPBP10A4D1E9 387 aaKnown RBP19■□□□□ 0.63
SQSTM1-209ENST00000504627 SCAMP3O14828 347 aaKnown RBP19■□□□□ 0.63
SQSTM1-209ENST00000504627 GTF2H1P32780 548 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 PXNP49023 591 aaPredicted RBP19■□□□□ 0.63
SQSTM1-209ENST00000504627 TCERG1LQ5VWI1 586 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 SPECC1LQ69YQ0 1117 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 TMC6Q7Z403 805 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 WDR5BQ86VZ2 330 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 DRC7Q8IY82 874 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 KIAA1958Q8N8K9 716 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 RPLP0P6Q8NHW5 317 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 CCDC26Q8TAB7 109 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 RMDN1Q96DB5 314 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 FBXO44Q9H4M3 255 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 APOBEC3GQ9HC16 384 aaKnown RBP19■□□□□ 0.63
SQSTM1-209ENST00000504627 GMIPQ9P107 970 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 IMPACTQ9P2X3 320 aa19■□□□□ 0.63
SQSTM1-209ENST00000504627 COCHO43405 550 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 STX10O60499 249 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 BEST1O76090 585 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 HOXC13P31276 330 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 MXI1P50539 228 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 FOXK2Q01167 660 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 INCA1Q0VD86 236 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 KCNH2Q12809 1159 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 TRIM14Q14142 442 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 ADGRG2Q8IZP9 1017 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 ZMIZ2Q8NF64 920 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 JAKMIP2Q96AA8 810 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 ACDQ96AP0 544 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 IQCDQ96DY2 449 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 CYFIP2Q96F07 1278 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 CCSER2Q9H7U1 834 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 CSNK1G1Q9HCP0 422 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 IL37Q9NZH6 218 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 TBC1D14Q9P2M4 693 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 SH3BP1Q9Y3L3 701 aa18.99■□□□□ 0.63
SQSTM1-209ENST00000504627 ATG2BQ96BY7 2078 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 P4HA2O15460 535 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 CYP17A1P05093 508 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 RETP07949 1114 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 TUBP50607 506 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 DHCR24Q15392 516 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 SNX30Q5VWJ9 437 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 ERMP1Q7Z2K6 904 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 TWNKQ96RR1 684 aa18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 HNRNPABQ99729 332 aaKnown RBP18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 TLR8Q9NR97 1041 aaKnown RBP18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 HELZP42694 1942 aaKnown RBP18.98■□□□□ 0.63
SQSTM1-209ENST00000504627 CCDC163A0A0D9SF12 145 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 E2F8A0AVK6 867 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 FAM92AA1XBS5 289 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 PMM2O15305 246 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 CILPO75339 1184 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 ADH1CP00326 375 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 FMO5P49326 533 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 SEC13P55735 322 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 SPEM2Q0P670 501 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 PUM1Q14671 1186 aaKnown RBP eCLIP18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 SYCP1Q15431 976 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 ZNF394Q53GI3 561 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 CAMKK1Q8N5S9 505 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 SPC24Q8NBT2 197 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 FBXL13Q8NEE6 735 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 HHIPQ96QV1 700 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 POLR3BQ9NW08 1133 aaPredicted RBP18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 RAB20Q9NX57 234 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 DMXL1Q9Y485 3027 aa18.97■□□□□ 0.63
SQSTM1-209ENST00000504627 RPP40O75818 363 aaKnown RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 PTMAP06454 111 aaKnown RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 ZDHHC11BP0C7U3 371 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 IRF1P10914 325 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 ACO1P21399 889 aaKnown RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 OPRD1P41143 372 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 GSDMDP57764 484 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 LMNB2Q03252 620 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 DMC1Q14565 340 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 RSPO4Q2I0M5 234 aaPredicted RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 FIGNQ5HY92 759 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 CLEC20AQ6ZU45 233 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 SYT13Q7L8C5 426 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 DGLUCYQ7Z3D6 616 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 TTC39CQ8N584 583 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 EZH1Q92800 747 aaPredicted RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 OTUB2Q96DC9 234 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 HEXIM2Q96MH2 286 aaKnown RBP18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 SIK3Q9Y2K2 1263 aa18.96■□□□□ 0.63
SQSTM1-209ENST00000504627 PRR5-ARHGAP8B1AHC4 643 aa18.95■□□□□ 0.62
SQSTM1-209ENST00000504627 TLR5O60602 858 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms