RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	SACM1L	Q9NTJ5	587 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	ZIM2	Q9NZV7	527 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	DKK4	Q9UBT3	224 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	NKX1-2	Q9UD57	310 aa	Predicted RBP	4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	AFF4	Q9UHB7	1163 aa	Known RBP	4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	ASAP1	Q9ULH1	1129 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	RIMKLB	Q9ULI2	386 aa		4.19	□□□□□ -1.74
CBX3-208	ENST00000497498	ANKRD62	A6NC57	917 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	RASSF9	O75901	435 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	PIAS2	O75928	621 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	TOMM40	O96008	361 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	CYP19A1	P11511	503 aa	Predicted RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	CD19	P15391	556 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	ME1	P48163	572 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	ANAPC15	P60006	121 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	YPEL5	P62699	121 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	GPC5	P78333	572 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	DEUP1	Q05D60	604 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	SLC14A1	Q13336	389 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	MFSD13A	Q14CX5	517 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	CNGA2	Q16280	664 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	GPR162	Q16538	588 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	CXorf57	Q6NSI4	855 aa	Known RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	ANKRD13B	Q86YJ7	626 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	NGDN	Q8NEJ9	315 aa	Known RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	WIPF2	Q8TF74	440 aa	Predicted RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	ZNF668	Q96K58	619 aa	Predicted RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	STK31	Q9BXU1	1019 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	FAM83D	Q9H4H8	585 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	TPCN1	Q9ULQ1	816 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	FZD4	Q9ULV1	537 aa		4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	4.18	□□□□□ -1.74
CBX3-208	ENST00000497498	hCG_2014768	A0A024R1R8	64 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	CFAP69	A5D8W1	941 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	AQP7P3	A6NL99	342 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	ALPL	P05186	524 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	TXN	P10599	105 aa	Known RBP	4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	PSG1	P11464	419 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	IL1R1	P14778	569 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	BRAF	P15056	766 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	ACVR2A	P27037	513 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	THBS3	P49746	956 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	CPT1A	P50416	773 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	ITGA8	P53708	1063 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	SLC29A2	Q14542	456 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	ST3GAL2	Q16842	350 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	SLC9C1	Q4G0N8	1177 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	C3orf38	Q5JPI3	329 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	USP49	Q70CQ1	688 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	MEPCE	Q7L2J0	689 aa	Known RBP	4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	ZNF548	Q8NEK5	533 aa	Predicted RBP	4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	MPLKIP	Q8TAP9	179 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	TRMO	Q9BU70	441 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	COL20A1	Q9P218	1284 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	SEMA5B	Q9P283	1151 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	STEAP1	Q9UHE8	339 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	VPS51	Q9UID3	782 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	HS3ST3B1	Q9Y662	390 aa		4.17	□□□□□ -1.74
CBX3-208	ENST00000497498	CCDC187	A0A096LP49	1063 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	CRYAB	P02511	175 aa	Known RBP	4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	ADRA1D	P25100	572 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	NANOS2	P60321	138 aa	Known RBP	4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	RPS16	P62249	146 aa	Known RBP	4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	FMO1	Q01740	532 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	CC2D1B	Q5T0F9	858 aa	Known RBP	4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	ADAMTS15	Q8TE58	950 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	ZDHHC12	Q96GR4	267 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	LYZL4	Q96KX0	146 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	CHST8	Q9H2A9	424 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	C1orf112	Q9NSG2	853 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	MID2	Q9UJV3	735 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	HDAC9	Q9UKV0	1011 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	CAPN11	Q9UMQ6	739 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	SPATA31A1	Q5TZJ5	1347 aa		4.16	□□□□□ -1.74
CBX3-208	ENST00000497498	FAM90A8P	A6NJQ4	464 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	RAB27B	O00194	218 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	FYB1	O15117	783 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	TULP3	O75386	442 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM90A13P	P0C7W8	464 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM90A24P	P0C7X0	464 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	ZKSCAN1	P17029	563 aa	Predicted RBP	4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	TPH1	P17752	444 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	BTF3	P20290	206 aa	Known RBP	4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	TACR3	P29371	465 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	COPA	P53621	1224 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	STK3	Q13188	491 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	MTX1	Q13505	466 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	STIM1	Q13586	685 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	CLCA4	Q14CN2	919 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	PFKFB3	Q16875	520 aa	Predicted RBP	4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	FAM110C	Q1W6H9	321 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	EARS2	Q5JPH6	523 aa	Known RBP	4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	PLAG1	Q6DJT9	500 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	PIM3	Q86V86	326 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	YAF2	Q8IY57	180 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	C11orf44	Q8N8P7	122 aa		4.15	□□□□□ -1.75
CBX3-208	ENST00000497498	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms