RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 CHADO15335 359 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 DNAJC6O75061 913 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 RFPL1O75677 317 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 CSH1P0DML2 217 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 CSH2P0DML3 217 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 TFE3P19532 575 aaPredicted RBP13.53□□□□□ -0.24
PTPN7-217ENST00000495688 ATP6V1C1P21283 382 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 CCNHP51946 323 aaPredicted RBP13.53□□□□□ -0.24
PTPN7-217ENST00000495688 CCDC14Q49A88 953 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 PPP6R3Q5H9R7 873 aaPredicted RBP13.53□□□□□ -0.24
PTPN7-217ENST00000495688 TTC39BQ5VTQ0 682 aaPredicted RBP13.53□□□□□ -0.24
PTPN7-217ENST00000495688 ARID3BQ8IVW6 561 aaPredicted RBP13.53□□□□□ -0.24
PTPN7-217ENST00000495688 DNAJC9Q8WXX5 260 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 FAM167AQ96KS9 214 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 C2orf40Q9H1Z8 148 aa13.53□□□□□ -0.24
PTPN7-217ENST00000495688 SSC5DA1L4H1 1573 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 DPPA5A6NC42 116 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 E7ENQ6 273 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 SMAPO00193 183 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 TBX10O75333 385 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 LUC7L3O95232 432 aaKnown RBP13.52□□□□□ -0.24
PTPN7-217ENST00000495688 TGDSO95455 350 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 LINGO3P0C6S8 592 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 TSHRP16473 764 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 BCAR1P56945 870 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 IRX4P78413 519 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 TMPRSS15P98073 1019 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 SMAD1Q15797 465 aaKnown RBP13.52□□□□□ -0.24
PTPN7-217ENST00000495688 CCDC6Q16204 474 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 MUM1Q2TAK8 710 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 MROH9Q5TGP6 573 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 ZCCHC23Q6ZST2 131 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 UNC5BQ8IZJ1 945 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 FBXO41Q8TF61 875 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 HPDLQ96IR7 371 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 SPATA33Q96N06 139 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 RNPEPQ9H4A4 650 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 IFT122Q9HBG6 1241 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 PLLPQ9Y342 182 aa13.52□□□□□ -0.24
PTPN7-217ENST00000495688 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 HMX2A2RU54 273 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SLC15A5A6NIM6 579 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 H3BRJ5 948 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 CAPN9O14815 690 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 METTL18O95568 372 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 ZBED1O96006 694 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 ENO1P06733 434 aaKnown RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 PFKMP08237 780 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SNRPAP09012 282 aaKnown RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 ATXN1P54253 815 aaKnown RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 TFDP2Q14188 446 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SNX30Q5VWJ9 437 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 UNC5AQ6ZN44 842 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 FBXO16Q8IX29 292 aaPredicted RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SCUBE3Q8IX30 993 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 B3GNT5Q9BYG0 378 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SPATC1LQ9H0A9 340 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 CXCL16Q9H2A7 254 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 PCMTD2Q9NV79 361 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 ETNK2Q9NVF9 386 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 PAK5Q9P286 719 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 SLC17A6Q9P2U8 582 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 CORO1CQ9ULV4 474 aaPredicted RBP13.52□□□□□ -0.25
PTPN7-217ENST00000495688 MAD1L1Q9Y6D9 718 aa13.52□□□□□ -0.25
PTPN7-217ENST00000495688 A6NHS1 94 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 SOCS7O14512 581 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 HNRNPCL1O60812 293 aaKnown RBP13.51□□□□□ -0.25
PTPN7-217ENST00000495688 TGFB3P10600 412 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 RARBP10826 455 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 OSBPP22059 807 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 AMPD1P23109 780 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 GCKP35557 465 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 RCN2Q14257 317 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 ACAP1Q15027 740 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 CHI3L2Q15782 390 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 SLC10A6Q3KNW5 377 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 ZNF772Q68DY9 489 aaPredicted RBP13.51□□□□□ -0.25
PTPN7-217ENST00000495688 PMF1Q6P1K2 205 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 CCDC62Q6P9F0 684 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 EP400NLQ6ZTU2 488 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 RIOX2Q8IUF8 465 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 FAM172AQ8WUF8 416 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 UCMAQ8WVF2 138 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 CLPTM1LQ96KA5 538 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 LPIN3Q9BQK8 851 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 PCDH18Q9HCL0 1135 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 PIH1D1Q9NWS0 290 aaKnown RBP13.51□□□□□ -0.25
PTPN7-217ENST00000495688 ZFATQ9P243 1243 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 TNFSF13BQ9Y275 285 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 LOC285556D6RIA3 1793 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 POLR2AP24928 1970 aaKnown RBP13.51□□□□□ -0.25
PTPN7-217ENST00000495688 A0A087WZ62 844 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 NVLO15381 856 aaKnown RBP13.51□□□□□ -0.25
PTPN7-217ENST00000495688 MAP3K13O43283 966 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 KRT37O76014 449 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 VDRP11473 427 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 RXRBP28702 533 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 KDSRQ06136 332 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 VGLL4Q14135 290 aa13.51□□□□□ -0.25
PTPN7-217ENST00000495688 FAM47CQ5HY64 1035 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms