RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 COMMD8Q9NX08 183 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 ZDHHC7Q9NXF8 308 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.28■□□□□ 0.84
USP39-218ENST00000493829 LMCD1Q9NZU5 365 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 COX16Q9P0S2 106 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 USTQ9Y2C2 406 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 ASB3Q9Y575 518 aa20.28■□□□□ 0.84
USP39-218ENST00000493829 SZT2Q5T011 3432 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 GRID2IPA4D2P6 1211 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 C2CD4BA6NLJ0 364 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 XYLBO75191 536 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 TADA3O75528 432 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 PALMO75781 387 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 MTA2O94776 668 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 HNRNPA1P09651 372 aaKnown RBP eCLIP20.27■□□□□ 0.84
USP39-218ENST00000493829 GJA1P17302 382 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 SULT1E1P49888 294 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 PITX1P78337 314 aaPredicted RBP20.27■□□□□ 0.84
USP39-218ENST00000493829 NTHL1P78549 312 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 DAAM2Q86T65 1068 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 MON1AQ86VX9 555 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 TMC8Q8IU68 726 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 MYLIPQ8WY64 445 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 ZNF707Q96C28 371 aaPredicted RBP20.27■□□□□ 0.84
USP39-218ENST00000493829 MYRFLQ96LU7 910 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 SLC2A13Q96QE2 648 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 SFXN1Q9H9B4 322 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 PIDD1Q9HB75 910 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 KCND1Q9NSA2 647 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 ASNSD1Q9NWL6 643 aa20.27■□□□□ 0.84
USP39-218ENST00000493829 PRRC2BQ5JSZ5 2229 aaKnown RBP20.27■□□□□ 0.84
USP39-218ENST00000493829 OBSL1O75147 1896 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 MYO1FO00160 1098 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 NRG2O14511 850 aaPredicted RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 GLI1P08151 1106 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 GABRR2P28476 465 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 HOXA9P31269 272 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 SDC4P31431 198 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 CYP4F8P98187 520 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 TCEAL1Q15170 157 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 RAB6CQ53S08 254 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 SH3PXD2AQ5TCZ1 1133 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 RSRC2Q7L4I2 434 aaKnown RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 GRASPQ7Z6J2 395 aaPredicted RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 ARHGAP18Q8N392 663 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 SMG7Q92540 1137 aaKnown RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 C16orf45Q96MC5 204 aaPredicted RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 PRKD2Q9BZL6 878 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 RAB6CQ9H0N0 254 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 CCSER2Q9H7U1 834 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 IL21Q9HBE4 155 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 DZANK1Q9NVP4 752 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 UXTQ9UBK9 157 aaPredicted RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 CDH22Q9UJ99 828 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 MDM4O15151 490 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 KIF5CO60282 957 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 FTCDO95954 541 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 SRGAP2BP0DMP2 458 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 RARGP13631 454 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 MATKP42679 507 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 IFI16Q16666 785 aaKnown RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 CCDC14Q49A88 953 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 HABP4Q5JVS0 413 aaKnown RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 ZNF569Q5MCW4 686 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 TMEM150AQ86TG1 271 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 PDZD8Q8NEN9 1154 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 ALS2CR12Q96Q35 445 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 TBCBQ99426 244 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 TRPC7Q9HCX4 862 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 ABCC13Q9NSE7 274 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 CLDND1Q9NY35 253 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 TRPM5Q9NZQ8 1165 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 DNMT3BQ9UBC3 853 aaKnown RBP20.26■□□□□ 0.83
USP39-218ENST00000493829 IP6K2Q9UHH9 426 aa20.26■□□□□ 0.83
USP39-218ENST00000493829 A0A1W2PRU2 124 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 ZNF840PA6NDX5 716 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 RHOP08100 348 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 TNNT1P13805 278 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 SSR1P43307 286 aaKnown RBP20.25■□□□□ 0.83
USP39-218ENST00000493829 ZNF143P52747 638 aaPredicted RBP20.25■□□□□ 0.83
USP39-218ENST00000493829 HADHBP55084 474 aaKnown RBP20.25■□□□□ 0.83
USP39-218ENST00000493829 RTL10Q7L3V2 364 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 RNF10Q8N5U6 811 aaKnown RBP20.25■□□□□ 0.83
USP39-218ENST00000493829 RNF139Q8WU17 664 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 GCNAQ96QF7 691 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 LRRC3Q9BY71 257 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 ADAM33Q9BZ11 813 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 FAM204AQ9H8W3 233 aa20.25■□□□□ 0.83
USP39-218ENST00000493829 C2orf78A6NCI8 922 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 TBX10O75333 385 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 PROSCO94903 275 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 TBX18O95935 607 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 RALAP11233 206 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 PTPN2P17706 415 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 CCR2P41597 374 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 GNG11P61952 73 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 NME3Q13232 169 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 C10orf120Q5SQS8 335 aa20.24■□□□□ 0.83
USP39-218ENST00000493829 OTUD1Q5VV17 481 aaPredicted RBP20.24■□□□□ 0.83
USP39-218ENST00000493829 ANKRD54Q6NXT1 300 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms