RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 BCLAF3A2AJT9 711 aaKnown RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 HOXC11O43248 304 aaPredicted RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 ADAM23O75077 832 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 TULP3O75386 442 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 ANO4Q32M45 955 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 ZCWPW2Q504Y3 356 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 STPG1Q5TH74 334 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 TMEM25Q86YD3 366 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 SMYD4Q8IYR2 804 aaPredicted RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 CYFIP2Q96F07 1278 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 DUSP9Q99956 384 aaKnown RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 SCAND2PQ9GZW5 306 aaPredicted RBP16.59■□□□□ 0.25
SMPD4-220ENST00000491319 CYP3A43Q9HB55 503 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 CYLDQ9NQC7 956 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 SCML2Q9UQR0 700 aa16.59■□□□□ 0.25
SMPD4-220ENST00000491319 ASCC3Q8N3C0 2202 aaKnown RBP16.58■□□□□ 0.25
SMPD4-220ENST00000491319 TM4SF5O14894 197 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 MDM4O15151 490 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 TRIM24O15164 1050 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 GREM1O60565 184 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 CILPO75339 1184 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 ZNF202O95125 648 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 CAVIN2O95810 425 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 TRIM21P19474 475 aaKnown RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 ACO1P21399 889 aaKnown RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 RPL13P26373 211 aaKnown RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 PSMC2P35998 433 aaKnown RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 ADAM9Q13443 819 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 HSF5Q4G112 596 aaPredicted RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 EOGTQ5NDL2 527 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 BTBD8Q5XKL5 378 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 RLN3Q8WXF3 142 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 EEF2KMTQ96G04 330 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 EDEM2Q9BV94 578 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 KLF16Q9BXK1 252 aaPredicted RBP16.58■□□□□ 0.24
SMPD4-220ENST00000491319 NMUR1Q9HB89 426 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 TMEM8AQ9HCN3 771 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 NUDT5Q9UKK9 219 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 ATP6V1DQ9Y5K8 247 aa16.58■□□□□ 0.24
SMPD4-220ENST00000491319 A0A1W2PQH9 124 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 TBC1D3BA6NDS4 549 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 ALDH1A2O94788 518 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 ATP5C1P36542 298 aaKnown RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 TNFRSF4P43489 277 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 ENPEPQ07075 957 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 ZNF394Q53GI3 561 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 C10orf76Q5T2E6 689 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 PPP1R26Q5T8A7 1209 aaPredicted RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 RNF43Q68DV7 783 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 C11orf74Q86VG3 221 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 ZNF513Q8N8E2 541 aaPredicted RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 TERB1Q8NA31 727 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 OLIG1Q8TAK6 271 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 HMGB4Q8WW32 186 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 DDX1Q92499 740 aaKnown RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 SEMA4DQ92854 862 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 PNPLA8Q9NP80 782 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 POLMQ9NP87 494 aaPredicted RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 BCCIPQ9P287 314 aaKnown RBP eCLIP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 DEC1Q9P2X7 70 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 CIZ1Q9ULV3 898 aaPredicted RBP16.57■□□□□ 0.24
SMPD4-220ENST00000491319 PCDHA5Q9Y5H7 936 aa16.57■□□□□ 0.24
SMPD4-220ENST00000491319 EPG5Q9HCE0 2579 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 TCRBV21S2A2A0A5A6 115 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 LNP1A1A4G5 178 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 NEDD8-MDP1E9PL57 170 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 DHPSP49366 369 aaPredicted RBP16.56■□□□□ 0.24
SMPD4-220ENST00000491319 KIF11P52732 1056 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 PNOCQ13519 176 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 EDRF1Q3B7T1 1238 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 KRT39Q6A163 491 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 TPGS1Q6ZTW0 290 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 HTR3DQ70Z44 454 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 CYP2U1Q7Z449 544 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 FRMD1Q8N878 549 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 CCDC150Q8NCX0 1101 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 ARID3AQ99856 593 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 DNAJC17Q9NVM6 304 aaKnown RBP16.56■□□□□ 0.24
SMPD4-220ENST00000491319 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.56■□□□□ 0.24
SMPD4-220ENST00000491319 LSM7Q9UK45 103 aaKnown RBP16.56■□□□□ 0.24
SMPD4-220ENST00000491319 HCN2Q9UL51 889 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 CHD8Q9HCK8 2581 aa16.56■□□□□ 0.24
SMPD4-220ENST00000491319 PATE3B3GLJ2 98 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 CACNG3O60359 315 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 RARGP13631 454 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 GTF2H1P32780 548 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 P2RY2P41231 377 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 MXI1P50539 228 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 GOLGA8FQ08AF8 430 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 GOLGA8DPQ0D2H9 430 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 C10orf120Q5SQS8 335 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 GRAMD4Q6IC98 578 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 MIB1Q86YT6 1006 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 SPACA7Q96KW9 195 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 BBS2Q9BXC9 721 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 DUSP16Q9BY84 665 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 MBD1Q9UIS9 605 aaPredicted RBP16.55■□□□□ 0.24
SMPD4-220ENST00000491319 NAGPAQ9UK23 515 aa16.55■□□□□ 0.24
SMPD4-220ENST00000491319 CKAP5Q14008 2032 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms