RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 OSER1Q9NX31 292 aa13.11□□□□□ -0.31
CPSF3-204ENST00000489403 DEC1Q9P2X7 70 aa13.11□□□□□ -0.31
CPSF3-204ENST00000489403 HHLA1C9JL84 531 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 MAP3K13O43283 966 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TBX18O95935 607 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 ASS1P00966 412 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 NR3C1P04150 777 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 HOXB2P14652 356 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 GABRG2P18507 467 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 CSRP1P21291 193 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 ADORA2BP29275 332 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 PIK3CAP42336 1068 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 DNM1Q05193 864 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 LMAN2Q12907 356 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 FOXC1Q12948 553 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 UAP1L1Q3KQV9 507 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 SPDYCQ5MJ68 293 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 C1orf220Q5T0J3 134 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 PEAR1Q5VY43 1037 aaPredicted RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 LYSMD4Q5XG99 296 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 EGFLAMQ63HQ2 1017 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 ATL3Q6DD88 541 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 HTR3DQ70Z44 454 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TRMT11Q7Z4G4 463 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 UNC93AQ86WB7 457 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 SYT12Q8IV01 421 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TMC2Q8TDI7 906 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 KCNV2Q8TDN2 545 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TAF4BQ92750 862 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 PAGE5Q96GU1 130 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TWNKQ96RR1 684 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 KLF16Q9BXK1 252 aaPredicted RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 NUSAP1Q9BXS6 441 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 TLR8Q9NR97 1041 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 DNAJC17Q9NVM6 304 aaKnown RBP13.1□□□□□ -0.31
CPSF3-204ENST00000489403 WASF3Q9UPY6 502 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 STARD13Q9Y3M8 1113 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 FRYQ5TBA9 3013 aa13.1□□□□□ -0.31
CPSF3-204ENST00000489403 A0A1W2PQF6 199 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 C1QTNF9BB2RNN3 333 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 NEDD8-MDP1E9PL57 170 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 PDXKO00764 312 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CYP26A1O43174 497 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CACNG3O60359 315 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 HLA-DRAP01903 254 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 RPN1P04843 607 aaKnown RBP13.09□□□□□ -0.31
CPSF3-204ENST00000489403 C1QTNF9P0C862 333 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 FAM200BP0CF97 657 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 PDIA4P13667 645 aaKnown RBP13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CEACAM1P13688 526 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 ENGP17813 658 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 ITPKAP23677 461 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 NTSR1P30989 418 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 WASP42768 502 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 BYSLQ13895 437 aaKnown RBP13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CEP135Q66GS9 1140 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 GRAMD4Q6IC98 578 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 SLC23A3Q6PIS1 610 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 TPGS1Q6ZTW0 290 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CLEC20AQ6ZU45 233 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 JAKMIP2Q96AA8 810 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 NMUR1Q9HB89 426 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CD248Q9HCU0 757 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CYLDQ9NQC7 956 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CALCOCO1Q9P1Z2 691 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 PILRBQ9UKJ0 227 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 RCOR1Q9UKL0 485 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CFAP45Q9UL16 551 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 SCML2Q9UQR0 700 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 ADAMTS9Q9P2N4 1935 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 ASPMQ8IZT6 3477 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 CHD8Q9HCK8 2581 aa13.09□□□□□ -0.31
CPSF3-204ENST00000489403 USP24Q9UPU5 2620 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 A0A1B0GVL5 298 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 IKBKBO14920 756 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 MDM4O15151 490 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 AP5Z1O43299 807 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 TOP3BO95985 862 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 PROS1P07225 676 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 TYRP14679 529 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 PFKFB1P16118 471 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 SPINK2P20155 84 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 ACO1P21399 889 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 ATP5C1P36542 298 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 MAPK8P45983 427 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 RPL6Q02878 288 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 INCA1Q0VD86 236 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 UNQ6494/PRO21346Q6UXR6 183 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 TOGARAM2Q6ZUX3 1019 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 NUDT18Q6ZVK8 323 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 HSCBQ8IWL3 235 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 DEFB119Q8N690 84 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 DEFB124Q8NES8 71 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 XPO6Q96QU8 1125 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 ACOX2Q99424 681 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 HNRNPABQ99729 332 aaKnown RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 BBS2Q9BXC9 721 aa13.08□□□□□ -0.32
CPSF3-204ENST00000489403 TMEM121BQ9BXQ6 578 aaPredicted RBP13.08□□□□□ -0.32
CPSF3-204ENST00000489403 APOBEC3GQ9HC16 384 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms