RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 ZNF334Q9HCZ1 680 aaPredicted RBP10.81□□□□□ -0.68
SKA1-204ENST00000488454 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.81□□□□□ -0.68
SKA1-204ENST00000488454 ADAM22Q9P0K1 906 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 GMIPQ9P107 970 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 ARHGAP20Q9P2F6 1191 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 THEGQ9P2T0 379 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 CYTH4Q9UIA0 394 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 ZMYM5Q9UJ78 669 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 NAGPAQ9UK23 515 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 STRIP2Q9ULQ0 834 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 USP3Q9Y6I4 520 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 CLUHO75153 1309 aa10.81□□□□□ -0.68
SKA1-204ENST00000488454 FAM170AA1A519 330 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 FAM92AA1XBS5 289 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 ZNF840PA6NDX5 716 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 DDX3XO00571 662 aaKnown RBP eCLIP10.8□□□□□ -0.682e-9■■■■■ 31.8
SKA1-204ENST00000488454 RTN2O75298 545 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 FTLP02792 175 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 CALB1P05937 261 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 PTMAP06454 111 aaKnown RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 PLEKP08567 350 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 GJA1P17302 382 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 MMP8P22894 467 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 DDX6P26196 483 aaKnown RBP eCLIP10.8□□□□□ -0.68
SKA1-204ENST00000488454 CYLC1P35663 651 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 RPL34P49207 117 aaKnown RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 YWHAGP61981 247 aaKnown RBP eCLIP10.8□□□□□ -0.68
SKA1-204ENST00000488454 MRPS5P82675 430 aaKnown RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 CENPCQ03188 943 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 ZNF268Q14587 947 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 PTPN20Q4JDL3 420 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 EFHC1Q5JVL4 640 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 PRSS36Q5K4E3 855 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 CCDC122Q5T0U0 273 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 HECTD3Q5T447 861 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 GPR158Q5T848 1215 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 BTBD8Q5XKL5 378 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 ALKBH5Q6P6C2 394 aaKnown RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 TOGARAM2Q6ZUX3 1019 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 GAREM2Q75VX8 874 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 GET4Q7L5D6 327 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 OTOP3Q7RTS5 596 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 PHF13Q86YI8 300 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 CCDC170Q8IYT3 715 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 SCML4Q8N228 414 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 ITFG1Q8TB96 612 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 RNF139Q8WU17 664 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 SUSD6Q92537 303 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 FAM149B1Q96BN6 582 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 ACSF2Q96CM8 615 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 TCEAL4Q96EI5 215 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 TRIM11Q96F44 468 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 VCPIP1Q96JH7 1222 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 CDK5RAP1Q96SZ6 601 aaKnown RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 BAG1Q99933 345 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 SYT11Q9BT88 431 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 IRX2Q9BZI1 471 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 FAM117AQ9C073 453 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 POMKQ9H5K3 350 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 TRPC7Q9HCX4 862 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 PRDM6Q9NQX0 595 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 WDR35Q9P2L0 1181 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 ZFP37Q9Y6Q3 630 aaPredicted RBP10.8□□□□□ -0.68
SKA1-204ENST00000488454 PLXNA3P51805 1871 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 NCANO14594 1321 aa10.8□□□□□ -0.68
SKA1-204ENST00000488454 A0A087X0T9 212 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 TRAV19A0A0A6YYK7 116 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 A0A1W2PQH9 124 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 SOBPA7XYQ1 873 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 CAPN9O14815 690 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 IPO7O95373 1038 aaKnown RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 ERBB2P04626 1255 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 FAM228BP0C875 321 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 JUNDP17535 347 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 GBP2P32456 591 aaPredicted RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 CCR2P41597 374 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 GABRB2P47870 512 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 DAOAP59103 153 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 SLC6A3Q01959 620 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 TFF2Q03403 129 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 GFPT1Q06210 699 aaPredicted RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 SPA17Q15506 151 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 TEAD2Q15562 447 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 SLC18A3Q16572 532 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 BSPRYQ5W0U4 402 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 MMS22LQ6ZRQ5 1243 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 RSRC2Q7L4I2 434 aaKnown RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 MAB21L3Q8N8X9 362 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 SHKBP1Q8TBC3 707 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 ATXN2LQ8WWM7 1075 aaKnown RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 ING5Q8WYH8 240 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 NDRG1Q92597 394 aaKnown RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 MCRS1Q96EZ8 462 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 C11orf70Q9BRQ4 267 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 PHF7Q9BWX1 381 aaPredicted RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 TASP1Q9H6P5 420 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 LUC7LQ9NQ29 371 aaKnown RBP10.79□□□□□ -0.68
SKA1-204ENST00000488454 ABCC13Q9NSE7 274 aa10.79□□□□□ -0.68
SKA1-204ENST00000488454 CLIC5Q9NZA1 410 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms