RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC12A3P55017 1021 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 CACHD1Q5VU97 1274 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 COLGALT1Q8NBJ5 622 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SYTL5Q8TDW5 730 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 PHF21AQ96BD5 680 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 C2orf81A6NN90 581 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SERPINB1P30740 379 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SHMT1P34896 483 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 AVENQ9NQS1 362 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 NCKIPSDQ9NZQ3 722 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 VIL1P09327 827 aaKnown RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 RBP1P09455 135 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 OR1G1P47890 313 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 TMED10P49755 219 aaKnown RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 NUP107P57740 925 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 CCDC81Q6ZN84 652 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 C11orf74Q86VG3 221 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 FAM131BQ86XD5 332 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF606Q8WXB4 792 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 OXNAD1Q96HP4 312 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SLITRK1Q96PX8 696 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 PDCD2LQ9BRP1 358 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 MPOP05164 745 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 RARRES1P49788 294 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 TAF1CQ15572 869 aaPredicted RBP16.94■□□□□ 0.3
COL7A1-210ENST00000487017 OTOP1Q7RTM1 612 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 ADGRF2Q8IZF7 708 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 DDHD1Q8NEL9 900 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 DNAJC18Q9H819 358 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 CYP4F12Q9HCS2 524 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 CRLS1Q9UJA2 301 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 KIDINS220Q9ULH0 1771 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 CLPTM1O96005 669 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SLC34A1Q06495 639 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SAMD7Q7Z3H4 446 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 DEFB107AQ8IZN7 70 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 BRD8Q9H0E9 1235 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 SELENONQ9NZV5 590 aa16.94■□□□□ 0.3
COL7A1-210ENST00000487017 AGLP35573 1532 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 FCHO1O14526 889 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 WBP4O75554 376 aaKnown RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 FBXO21O94952 628 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 SLC1A6P48664 564 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 CPT1AP50416 773 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 ST8SIA6P61647 398 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 ZKSCAN4Q969J2 545 aaPredicted RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 ZBTB10Q96DT7 871 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 MYLK2Q9H1R3 596 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 USP6NLQ92738 828 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 SOX10P56693 466 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 BACE1P56817 501 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 CHRNB3Q05901 458 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 PKN2Q16513 984 aaKnown RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 N4BP2L1Q5TBK1 243 aaPredicted RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 VPS26AO75436 327 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 SERPINI2O75830 405 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 NFYCQ13952 458 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 PGM5Q15124 567 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 OASLQ15646 514 aaKnown RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 TRIM69Q86WT6 500 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 BBS7Q8IWZ6 715 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 CYP2W1Q8TAV3 490 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 CPB2Q96IY4 423 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 TMEM237Q96Q45 408 aa16.93■□□□□ 0.3
COL7A1-210ENST00000487017 ABI2Q9NYB9 513 aaPredicted RBP16.93■□□□□ 0.3
COL7A1-210ENST00000487017 SERPINE1P05121 402 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 BST2Q10589 180 aaKnown RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 TTLL9Q3SXZ7 439 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 ERMARDQ5T6L9 678 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 TDRD10Q5VZ19 366 aaKnown RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 SPIRE2Q8WWL2 714 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 PLEKHA8Q96JA3 519 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 APOL2Q9BQE5 337 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 VANGL2Q9ULK5 521 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 A0A0U1RQJ8 604 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 CACNA2D1P54289 1103 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 RPRD1AQ96P16 312 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 MTMR9Q96QG7 549 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 FICDQ9BVA6 458 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 PDE2AO00408 941 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 CYB561D2O14569 222 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 SSTR1P30872 391 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 ZNF268Q14587 947 aaPredicted RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 CCDC153Q494R4 210 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 GALNTL6Q49A17 601 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 KYQ8NBH2 561 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 GEMIN8Q9NWZ8 242 aaKnown RBP16.92■□□□□ 0.3
COL7A1-210ENST00000487017 C15orf41Q9Y2V0 281 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 C17orf102A2RUQ5 167 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 CYP2B6P20813 491 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 WASHC5Q12768 1159 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 TERB1Q8NA31 727 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 CENPTQ96BT3 561 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 SIKE1Q9BRV8 207 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 TCF7L2Q9NQB0 619 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 INTS13Q9NVM9 706 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 THAP1Q9NVV9 213 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 KBTBD13C9JR72 458 aa16.92■□□□□ 0.3
COL7A1-210ENST00000487017 SOAT1P35610 550 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms