RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 ACOT2P49753 483 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 SOX10P56693 466 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 WNT7BP56706 349 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ROR1Q01973 937 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 DLG1Q12959 904 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 CCNIQ14094 377 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 KCNJ11Q14654 390 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 MYBPC3Q14896 1274 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 TRIP10Q15642 601 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 DBN1Q16643 649 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 KLHL23Q8NBE8 558 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 AGBL3Q8NEM8 1001 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 RDM1Q8NG50 284 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 PPP1R14CQ8TAE6 165 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 MIPOL1Q8TD10 442 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 NMD3Q96D46 503 aaKnown RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 CGRRF1Q99675 332 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 EBF4Q9BQW3 602 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 XAB2Q9HCS7 855 aaKnown RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 PREBQ9HCU5 417 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ETNK2Q9NVF9 386 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ARHGAP28Q9P2N2 729 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ADAMTS6Q9UKP5 1117 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ITGA11Q9UKX5 1188 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 GMEB1Q9Y692 573 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 GJA3Q9Y6H8 435 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 LRCH4O75427 683 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 RFPL1O75677 317 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 CCNE2O96020 404 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ITGA2BP08514 1039 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 SPATA31D3P0C874 917 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 SERPINB6P35237 376 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 VASPP50552 380 aaPredicted RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 KCNT1Q5JUK3 1230 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 DACT2Q5SW24 774 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 FKBP1CQ5VVH2 108 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 CES4AQ5XG92 561 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 RSBN1LQ6PCB5 846 aaPredicted RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 SPATA31D4Q6ZUB0 917 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 TAS1R3Q7RTX0 852 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 SPATA18Q8TC71 538 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 FAF2Q96CS3 445 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 AGBL1Q96MI9 1066 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 ZNF395Q9H8N7 513 aaPredicted RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 CLIC5Q9NZA1 410 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 APOBEC2Q9Y235 224 aaKnown RBP13.78□□□□□ -0.2
USP40-214ENST00000483519 ZNF541Q9H0D2 1346 aa13.78□□□□□ -0.2
USP40-214ENST00000483519 C15orf38-AP3S2A0A0A6YYH1 394 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 A0A0B4J269 797 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 NFIBO00712 420 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 CYB561D2O14569 222 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 CASQ2O14958 399 aaPredicted RBP13.77□□□□□ -0.2
USP40-214ENST00000483519 DGAT1O75907 488 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 EIF4BP23588 611 aaKnown RBP13.77□□□□□ -0.2
USP40-214ENST00000483519 EPHB1P54762 984 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 CBLBQ13191 982 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 NCOA4Q13772 614 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 UGT2A3Q6UWM9 527 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 ARPINQ7Z6K5 226 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 CCDC33Q8N5R6 958 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 KCTD6Q8NC69 237 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 ACTRT2Q8TDY3 377 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 Q9H521 79 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 FAM96AQ9H5X1 160 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 TDRD3Q9H7E2 651 aaKnown RBP13.77□□□□□ -0.2
USP40-214ENST00000483519 ZC3H7BQ9UGR2 993 aaKnown RBP13.77□□□□□ -0.2
USP40-214ENST00000483519 MAD1L1Q9Y6D9 718 aa13.77□□□□□ -0.2
USP40-214ENST00000483519 DKC1O60832 514 aaKnown RBP eCLIP13.77□□□□□ -0.21
USP40-214ENST00000483519 LDHAP00338 332 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 FAM200BP0CF97 657 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 IMPDH2P12268 514 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 PRKCHP24723 683 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 IL1R2P27930 398 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 POLR2BP30876 1174 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 CRHR1P34998 444 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 RPL5P46777 297 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 USP46P62068 366 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 BTKQ06187 659 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 ZYXQ15942 572 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 CYP4A22Q5TCH4 519 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 GPAT2Q6NUI2 795 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 DARS2Q6PI48 645 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 B3GNT6Q6ZMB0 384 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 RNF111Q6ZNA4 994 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 NCAPG2Q86XI2 1143 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 PIWIL2Q8TC59 973 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 FBXO28Q9NVF7 368 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 CDH22Q9UJ99 828 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 STYXL1Q9Y6J8 313 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 SPDYE2BA6NHP3 402 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 C1QAP02745 245 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 SPDYE6P0CI01 402 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 KRT3P12035 628 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 CDH5P33151 784 aaPredicted RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 YWHAZP63104 245 aaKnown RBP13.77□□□□□ -0.21
USP40-214ENST00000483519 GRAMD1BQ3KR37 738 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 SPDYE2Q495Y8 402 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 PGM2L1Q6PCE3 622 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 NDUFAF2Q8N183 169 aa13.77□□□□□ -0.21
USP40-214ENST00000483519 UBR7Q8N806 425 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms