RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 NRSN2Q9GZP1 204 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 MARCH5Q9NX47 278 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 DNAJB4Q9UDY4 337 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 ADAMTS1Q9UHI8 967 aa7.06□□□□□ -1.28
USP48-208ENST00000479177 PRG3Q9Y2Y8 225 aaPredicted RBP7.06□□□□□ -1.28
USP48-208ENST00000479177 PTPRDP23468 1912 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 A0A0U1RQJ8 604 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 I3L4J1 428 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 O00370 1275 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 GABRDO14764 452 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 THAP12O43422 761 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 HCRTO43612 131 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 IPO7O95373 1038 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 FGBP02675 491 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 MMEP08473 750 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 ODC1P11926 461 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 CD19P15391 556 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 FSTP19883 344 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 TYMPP19971 482 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 TNFAIP3P21580 790 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 MSNP26038 577 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 ARHGAP25P42331 645 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 BRCC3P46736 316 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 OR1G1P47890 313 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 CD97P48960 835 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 VAV2P52735 878 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 KRT83P78385 493 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 SPA17Q15506 151 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 CLEC16AQ2KHT3 1053 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 ZNF394Q53GI3 561 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 DSTYKQ6XUX3 929 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 DNAJC14Q6Y2X3 702 aaPredicted RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 TRIM72Q6ZMU5 477 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 OTOP2Q7RTS6 562 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 TMCO2Q7Z6W1 182 aaPredicted RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 REXO1L1PQ8IX06 675 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 CMTR2Q8IYT2 770 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 OR6B3Q8NGW1 331 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 BCL7CQ8WUZ0 217 aaPredicted RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 ATRIPQ8WXE1 791 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 HERVK_113Q902F9 699 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 TMEM176AQ96HP8 235 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 PCDHB18PQ96TA0 734 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 RTP3Q9BQQ7 232 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.05□□□□□ -1.28
USP48-208ENST00000479177 NT5C1AQ9BXI3 368 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 SNX25Q9H3E2 840 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 DPEP3Q9H4B8 488 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 SOX17Q9H6I2 414 aaPredicted RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 CWH43Q9H720 699 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 SEPT11Q9NVA2 429 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 TAS2R14Q9NYV8 317 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 PUF60Q9UHX1 559 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 PCDHA13Q9Y5I0 950 aa7.05□□□□□ -1.28
USP48-208ENST00000479177 OAS3Q9Y6K5 1087 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 RANBP2P49792 3224 aaKnown RBP7.05□□□□□ -1.28
USP48-208ENST00000479177 NCANO14594 1321 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ARHGEF37A1IGU5 675 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 CCDC85CA6NKD9 419 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 A8MXQ7 604 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 NRP1O14786 923 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 CCP110O43303 1012 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ZSCAN12O43309 604 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ZNF500O60304 480 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 LSM8O95777 96 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 EFEMP2O95967 443 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 B3GALT4O96024 378 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 CYP1A1P04798 512 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 GALTP07902 379 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 VDRP11473 427 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 GZMAP12544 262 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 UNGP13051 313 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 TKTP29401 623 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 CDH5P33151 784 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 GNL1P36915 607 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 PBX3P40426 434 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 LHX1P48742 406 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 BCAR1P56945 870 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 NOMO3P69849 1222 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 HTRA4P83105 476 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 CCDC142Q17RM4 750 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 SGO2Q562F6 1265 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 CCDC122Q5T0U0 273 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 C10orf76Q5T2E6 689 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 RASIP1Q5U651 963 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 NAA35Q5VZE5 725 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ARHGAP17Q68EM7 881 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 DENND1BQ6P3S1 775 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ALKBH5Q6P6C2 394 aaKnown RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 ZNF662Q6ZS27 426 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 KIAA1328Q86T90 577 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ACOT1Q86TX2 421 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 TMEM173Q86WV6 379 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 PASD1Q8IV76 773 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 CRYBG2Q8N1P7 616 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 ZNF606Q8WXB4 792 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 SLC9A7Q96T83 725 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 LBHD1Q9BQE6 289 aaPredicted RBP7.04□□□□□ -1.28
USP48-208ENST00000479177 SYT15Q9BQS2 421 aa7.04□□□□□ -1.28
USP48-208ENST00000479177 PACSIN1Q9BY11 444 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms