RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 FMR1NBQ8N0W7 255 aaPredicted RBP8.54□□□□□ -1.04
USP48-207ENST00000471752 SLC4A11Q8NBS3 891 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 GOLGA5Q8TBA6 731 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 CYFIP2Q96F07 1278 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 ZC3H10Q96K80 434 aaKnown RBP8.54□□□□□ -1.04
USP48-207ENST00000471752 SLITRK1Q96PX8 696 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 PNKPQ96T60 521 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 HNRNPABQ99729 332 aaKnown RBP8.54□□□□□ -1.04
USP48-207ENST00000471752 ZSWIM1Q9BR11 485 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 OCEL1Q9H607 264 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 DMAP1Q9NPF5 467 aaPredicted RBP8.54□□□□□ -1.04
USP48-207ENST00000471752 ARHGEF4Q9NR80 690 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 TMEM74BQ9NUR3 256 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 EBF1Q9UH73 591 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 CDV3Q9UKY7 258 aaKnown RBP8.54□□□□□ -1.04
USP48-207ENST00000471752 ITPR1Q14643 2758 aa8.54□□□□□ -1.04
USP48-207ENST00000471752 EML5Q05BV3 1969 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 A0A1W2PQ27 194 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 A0A1W2PQ64 194 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 A0A1W2PQD8 194 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 E2F8A0AVK6 867 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 BCLAF3A2AJT9 711 aaKnown RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 CALUO43852 315 aaPredicted RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 TLR5O60602 858 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 GADD45BO75293 160 aaPredicted RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 RTN3O95197 1032 aaPredicted RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 KIF20AO95235 890 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 APBB3O95704 486 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 HMBSP08397 361 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 CISD3P0C7P0 127 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 ADH5P11766 374 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 RARGP13631 454 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 BMP6P22004 513 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 KIF11P52732 1056 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 AP3M2P53677 418 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 RAD23BP54727 409 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 CREB5Q02930 508 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 INCA1Q0VD86 236 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 LRMPQ12912 555 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 NR1H3Q13133 447 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 CRY1Q16526 586 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 ANO4Q32M45 955 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 N4BP2L1Q5TBK1 243 aaPredicted RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 STPG1Q5TH74 334 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 EGFLAMQ63HQ2 1017 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 KIAA1211LQ6NV74 962 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 BHLHA9Q7RTU4 235 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 RASSF3Q86WH2 238 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 TMEFF1Q8IYR6 380 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 GUF1Q8N442 669 aaKnown RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 CAMKK1Q8N5S9 505 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 TSTD1Q8NFU3 115 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 OLIG1Q8TAK6 271 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 HMGB4Q8WW32 186 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 KAT5Q92993 513 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 SECISBP2LQ93073 1101 aaKnown RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 SMARCD1Q96GM5 515 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 CD248Q9HCU0 757 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.53□□□□□ -1.04
USP48-207ENST00000471752 MMP17Q9ULZ9 603 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 FRMD4BQ9Y2L6 1034 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 RAD54BQ9Y620 910 aa8.53□□□□□ -1.04
USP48-207ENST00000471752 MYO18AQ92614 2054 aaKnown RBP8.53□□□□□ -1.04
USP48-207ENST00000471752 CCDC163A0A0D9SF12 145 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 A0A1W2PQF6 199 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 TBC1D3BA6NDS4 549 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 C4orf47A7E2U8 309 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 RNF225M0QZC1 329 aaPredicted RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 FAM200BP0CF97 657 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 GBP1P32455 592 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 PSMC2P35998 433 aaKnown RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 MPLP40238 635 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 GRIA2P42262 883 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 PPP3CCP48454 512 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 IRX4P78413 519 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 AMPD2Q01433 879 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 NFIL3Q16649 462 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 MAP7D1Q3KQU3 841 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 FBXO43Q4G163 708 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 AASDHQ4L235 1098 aaPredicted RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 HTR3DQ70Z44 454 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 UNC93AQ86WB7 457 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 GPR161Q8N6U8 529 aaKnown RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 OR2I1PQ8NGU4 316 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 UBA3Q8TBC4 463 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 NETO1Q8TDF5 533 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 TNIP3Q96KP6 325 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 CEP295NLQ96MC4 621 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 HEXIM2Q96MH2 286 aaKnown RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 RTKNQ9BST9 563 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 NT5C1AQ9BXI3 368 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 DUSP16Q9BY84 665 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 TMEM8AQ9HCN3 771 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 SPHK2Q9NRA0 654 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 USP25Q9UHP3 1055 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 CIZ1Q9ULV3 898 aaPredicted RBP8.52□□□□□ -1.05
USP48-207ENST00000471752 SCML2Q9UQR0 700 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 PCDHA5Q9Y5H7 936 aa8.52□□□□□ -1.05
USP48-207ENST00000471752 KNL1Q8NG31 2342 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms