RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 SMPD4Q9NXE4 827 aa21.29■■□□□ 1
PTCD3-206ENST00000465560 AIPL1Q9NZN9 384 aa21.29■■□□□ 1
PTCD3-206ENST00000465560 TJP2Q9UDY2 1190 aa21.29■■□□□ 1
PTCD3-206ENST00000465560 LEFTY2O00292 366 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 ZNF263O14978 683 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 CHADO15335 359 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 SNX16P57768 344 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 NOMO3P69849 1222 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 PLCB2Q00722 1185 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 PFKPQ01813 784 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 MTF1Q14872 753 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 ASIC2Q16515 512 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 C10orf120Q5SQS8 335 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 SFMBT2Q5VUG0 894 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 BSPRYQ5W0U4 402 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 BTBD8Q5XKL5 378 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 TRIM72Q6ZMU5 477 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 HFE2Q6ZVN8 426 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 KIAA1958Q8N8K9 716 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 IPO4Q8TEX9 1081 aaKnown RBP21.28■■□□□ 1
PTCD3-206ENST00000465560 DNASE1L2Q92874 299 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 IRF7Q92985 503 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 EPHX3Q9H6B9 360 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 BRD9Q9H8M2 597 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 ABCC13Q9NSE7 274 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 THG1LQ9NWX6 298 aaKnown RBP21.28■■□□□ 1
PTCD3-206ENST00000465560 DNMT3LQ9UJW3 386 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 NUDT5Q9UKK9 219 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 CAPN11Q9UMQ6 739 aa21.28■■□□□ 1
PTCD3-206ENST00000465560 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.28■■□□□ 13e-10■□□□□ 8.4
PTCD3-206ENST00000465560 ARNTLO00327 626 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 AP5Z1O43299 807 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 LTFP02788 710 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 CYP1A1P04798 512 aaPredicted RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 GYPCP04921 128 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 E4F1Q66K89 784 aaPredicted RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 SPECC1LQ69YQ0 1117 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 TRIM67Q6ZTA4 783 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 RSRC2Q7L4I2 434 aaKnown RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 VSTM4Q8IW00 320 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 GOLGA1Q92805 767 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 AGPAT1Q99943 283 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 KLF16Q9BXK1 252 aaPredicted RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 NUCKS1Q9H1E3 243 aaKnown RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 TRPV5Q9NQA5 729 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 OLA1Q9NTK5 396 aaKnown RBP21.27■■□□□ 1
PTCD3-206ENST00000465560 WNT16Q9UBV4 365 aa21.27■■□□□ 1
PTCD3-206ENST00000465560 MDM4O15151 490 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 ERBB2P04626 1255 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 PRKCIP41743 596 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 ZBED6P86452 979 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 NAA35Q5VZE5 725 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 CC2D1AQ6P1N0 951 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-206ENST00000465560 MSANTD4Q8NCY6 345 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 TTC16Q8NEE8 873 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 ZNF397Q8NF99 534 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-206ENST00000465560 EDEM1Q92611 657 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 ASIC4Q96FT7 647 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 ZFYVE19Q96K21 471 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 SYNCQ9H7C4 482 aa21.26■□□□□ 0.99
PTCD3-206ENST00000465560 GABRB2P47870 512 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 GOLGA8FQ08AF8 430 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 GOLGA8DPQ0D2H9 430 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 EFEMP1Q12805 493 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 TRIM14Q14142 442 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 FAM183BPQ6ZVS7 135 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 BEND5Q7L4P6 421 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 ERICH1Q86X53 443 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 ZDHHC17Q8IUH5 632 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 RNF139Q8WU17 664 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 OSCP1Q8WVF1 389 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 CPLX3Q8WVH0 158 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 CPA5Q8WXQ8 436 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 SYN2Q92777 582 aaPredicted RBP21.25■□□□□ 0.99
PTCD3-206ENST00000465560 FAM149B1Q96BN6 582 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 PCDHB18PQ96TA0 734 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 FAM83CQ9BQN1 747 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 SYT11Q9BT88 431 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 TRIM62Q9BVG3 475 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 TRIM5Q9C035 493 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 GKN1Q9NS71 199 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 CFAP97Q9P2B7 532 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 RASAL2Q9UJF2 1139 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 FBXL21Q9UKT6 434 aa21.25■□□□□ 0.99
PTCD3-206ENST00000465560 LUC7L2Q9Y383 392 aaKnown RBP21.25■□□□□ 0.99
PTCD3-206ENST00000465560 COL4A3Q01955 1670 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 MYOFQ9NZM1 2061 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 UNGP13051 313 aaPredicted RBP21.24■□□□□ 0.99
PTCD3-206ENST00000465560 MSANTD2Q6P1R3 559 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 OLFML1Q6UWY5 402 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 MIB1Q86YT6 1006 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 C18orf8Q96DM3 657 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 PIWIL1Q96J94 861 aaKnown RBP21.24■□□□□ 0.99
PTCD3-206ENST00000465560 ASNSD1Q9NWL6 643 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 MARCH2Q9P0N8 246 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 STRIP2Q9ULQ0 834 aa21.24■□□□□ 0.99
PTCD3-206ENST00000465560 E2F8A0AVK6 867 aa21.23■□□□□ 0.99
PTCD3-206ENST00000465560 TMEM221A6NGB7 291 aa21.23■□□□□ 0.99
PTCD3-206ENST00000465560 M0R296 226 aa21.23■□□□□ 0.99
PTCD3-206ENST00000465560 FYNP06241 537 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms