RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 E9PBE3 544 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 NFIBO00712 420 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 KLHL41O60662 606 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 CBX6O95503 412 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 ATP4AP20648 1035 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 ACAP1Q15027 740 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 DEPDC1Q5TB30 811 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 LPCAT2Q7L5N7 544 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 PRCCQ92733 491 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 CISHQ9NSE2 258 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF268Q14587 947 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 DUPD1Q68J44 220 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 MRNIPQ6NTE8 343 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 SLC22A9Q8IVM8 553 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 FAM9CQ8IZT9 166 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 ZNF333Q96JL9 665 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 TUBGCP4Q9UGJ1 667 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 UBQLN1Q9UMX0 589 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 NCAM2O15394 837 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 FAM200BP0CF97 657 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 TAF6P49848 677 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 DLG3Q92796 817 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 MPP4Q96JB8 637 aa19.58■□□□□ 0.72
CCDC88B-204ENST00000463837 DYNC1LI2O43237 492 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 RHOBTB1O94844 696 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 SUPT7LO94864 414 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 CDC25CP30307 473 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 POU4F1Q01851 419 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 ANGEL2Q5VTE6 544 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 INTS5Q6P9B9 1019 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 TUBGCP3Q96CW5 907 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 DCUN1D1Q96GG9 259 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 LRRC19Q9H756 370 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 EIF3LQ9Y262 564 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 C5orf58C9J3I9 102 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 CETPP11597 493 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 MPP3Q13368 585 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 GSTA3Q16772 222 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 N4BP2L1Q5TBK1 243 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 NIPA1Q7RTP0 329 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 YAF2Q8IY57 180 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 VPS37AQ8NEZ2 397 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 RMND5BQ96G75 393 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 RABGEF1Q9UJ41 708 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 PKP3Q9Y446 797 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 RCCD1A6NED2 376 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 SUPT20HL2P0C7V6 817 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 GP5P40197 560 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 RGS2P41220 211 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 CCDC15Q0P6D6 951 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 OTULINQ96BN8 352 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 TMEM79Q9BSE2 394 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 AGO4Q9HCK5 861 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 C6orf222P0C671 652 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 TIGD7Q6NT04 549 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 TTC30AQ86WT1 665 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 HES6Q96HZ4 224 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 MAGED4Q96JG8 741 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 POP1Q99575 1024 aaKnown RBP19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 NEUROG2Q9H2A3 272 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 GGA3Q9NZ52 723 aa19.57■□□□□ 0.72
CCDC88B-204ENST00000463837 ABLIM1O14639 778 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 PTPN7P35236 360 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 TJAP1Q5JTD0 557 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SLFN11Q7Z7L1 901 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 IQCKQ8N0W5 287 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 B4GALNT2Q8NHY0 566 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 PRDM5Q9NQX1 630 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SYBUQ9NX95 663 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 CORO1CQ9ULV4 474 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 ANKRD6Q9Y2G4 727 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 CYBBP04839 570 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 CYP1A2P05177 515 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 RAG1P15918 1043 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 AVPR1AP37288 418 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 TAF2Q6P1X5 1199 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 ZDHHC15Q96MV8 337 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 INPP4AQ96PE3 977 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 DYRK4Q9NR20 520 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 AP4E1Q9UPM8 1137 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SHOX2O60902 331 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 BMPR2Q13873 1038 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SH3GL2Q99962 352 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 IARS2Q9NSE4 1012 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 PCDHB8Q9UN66 801 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 MYOM1P52179 1685 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 PGAM1P18669 254 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SKIV2LQ15477 1246 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 SEZ6Q53EL9 994 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 NOTUMQ6P988 496 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 TMEM176AQ96HP8 235 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 TMEM161AQ9NX61 479 aa19.56■□□□□ 0.72
CCDC88B-204ENST00000463837 M0QYT0 321 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 NCAM1P13591 858 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 BCAT1P54687 386 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 FUT11Q495W5 492 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 ACCSLQ4AC99 568 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms