RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 A0A1W2PQH9 124 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 K7EQS6 105 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 HOXC11O43248 304 aaPredicted RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 FOXD2O60548 495 aaPredicted RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 RALAP11233 206 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 RARGP13631 454 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 PGFP49763 221 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 MRPS21P82921 87 aaKnown RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 CUL2Q13617 745 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 ANO4Q32M45 955 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 CCDC40Q4G0X9 1142 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 HSF5Q4G112 596 aaPredicted RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 C10orf120Q5SQS8 335 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 KLHDC10Q6PID8 442 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 PRR23CQ6ZRP0 262 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 CCDC186Q7Z3E2 898 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 SLC4A11Q8NBS3 891 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 SLC35C1Q96A29 364 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 DHTKD1Q96HY7 919 aaPredicted RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 LOXL4Q96JB6 756 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 CEP63Q96MT8 703 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 SPHK2Q9NRA0 654 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP4-206ENST00000461553 EBF1Q9UH73 591 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 DNMT3LQ9UJW3 386 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 COQ4Q9Y3A0 265 aa14.69□□□□□ -0.06
USP4-206ENST00000461553 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 TNRC6BQ9UPQ9 1833 aaKnown RBP14.69□□□□□ -0.06
USP4-206ENST00000461553 NCOR2Q9Y618 2525 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 BICDL2A1A5D9 508 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 EPN2O95208 641 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 TBX18O95935 607 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 TGM1P22735 817 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 TBXAS1P24557 533 aaPredicted RBP14.68□□□□□ -0.06
USP4-206ENST00000461553 TIE1P35590 1138 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 GRIA2P42262 883 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 SLC6A11P48066 632 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 DGKEP52429 567 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 BCAT1P54687 386 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 RAD23BP54727 409 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 ELF2Q15723 593 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 CSRP2Q16527 193 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 GOLGA7BQ2TAP0 167 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 ARHGAP17Q68EM7 881 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 ISM2Q6H9L7 571 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 ANO7Q6IWH7 933 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 KLHL10Q6JEL2 608 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 NUDT18Q6ZVK8 323 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 KBTBD6Q86V97 674 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 CCDC33Q8N5R6 958 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 NETO1Q8TDF5 533 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 TATDN2Q93075 761 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 KLF16Q9BXK1 252 aaPredicted RBP14.68□□□□□ -0.06
USP4-206ENST00000461553 NMUR1Q9HB89 426 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 OSER1Q9NX31 292 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 DEC1Q9P2X7 70 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 CTNND2Q9UQB3 1225 aa14.68□□□□□ -0.06
USP4-206ENST00000461553 CNOT1A5YKK6 2376 aaKnown RBP14.68□□□□□ -0.06
USP4-206ENST00000461553 NEDD8-MDP1E9PL57 170 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 MDM4O15151 490 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 ALDH1A2O94788 518 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 KLF8O95600 359 aaPredicted RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 CD19P15391 556 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 PI4KAP42356 2102 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 FMO5P49326 533 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 SGO2Q562F6 1265 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 EOGTQ5NDL2 527 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 HTR3DQ70Z44 454 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TRMT11Q7Z4G4 463 aaKnown RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 PIGZQ86VD9 579 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 C11orf74Q86VG3 221 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TTC30AQ86WT1 665 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 ETFBKMTQ8IXQ9 262 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 ARHGAP18Q8N392 663 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 ALLCQ8N6M5 410 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 NAT16Q8N8M0 369 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TERB1Q8NA31 727 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TXNDC5Q8NBS9 432 aaKnown RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 WBP2Q969T9 261 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 CNOT6LQ96LI5 555 aaKnown RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 XPO6Q96QU8 1125 aaKnown RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 RTKNQ9BST9 563 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TPSD1Q9BZJ3 242 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 CLIC5Q9NZA1 410 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 HESX1Q9UBX0 185 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 RASAL2Q9UJF2 1139 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 NUDT5Q9UKK9 219 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TSPAN16Q9UKR8 245 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 CIZ1Q9ULV3 898 aaPredicted RBP14.67□□□□□ -0.06
USP4-206ENST00000461553 USP3Q9Y6I4 520 aa14.67□□□□□ -0.06
USP4-206ENST00000461553 TBC1D3BA6NDS4 549 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 TULP3O75386 442 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 RHOBTB1O94844 696 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 CD44P16070 742 aaKnown RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 GBP1P32455 592 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 TNFRSF4P43489 277 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 PLA2G4AP47712 749 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 MESP2Q0VG99 397 aa14.66□□□□□ -0.06
USP4-206ENST00000461553 BST2Q10589 180 aaKnown RBP14.66□□□□□ -0.06
USP4-206ENST00000461553 CETN1Q12798 172 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms