RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PLA2G4AP47712 749 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 CXCL12P48061 93 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 CCR3P51677 355 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 SATB1Q01826 763 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 EXOC3L4Q17RC7 722 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 MIIPQ5JXC2 388 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 BBS7Q8IWZ6 715 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 KCTD13Q8WZ19 329 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 EZH1Q92800 747 aaPredicted RBP13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 NELL1Q92832 810 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 OTUB2Q96DC9 234 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 TUBGCP2Q9BSJ2 902 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 ULBP1Q9BZM6 244 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 LRRC4Q9HBW1 653 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 C2orf42Q9NWW7 574 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 KIAA1549LQ6ZVL6 1849 aa13.39□□□□□ -0.27
PRPF40A-203ENST00000448428 GFRA3O60609 400 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 TDGF1P13385 188 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 PRKCSHP14314 528 aaPredicted RBP13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 SLC6A11P48066 632 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 MFAP3P55082 362 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 YWHAGP61981 247 aaKnown RBP eCLIP13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 ADIGQ0VDE8 80 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 STILQ15468 1287 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 ARHGAP44Q17R89 818 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 VWA3BQ502W6 1294 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 LY6G5CQ5SRR4 150 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 PMF1Q6P1K2 205 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 PKN3Q6P5Z2 889 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 ENOSF1Q7L5Y1 443 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 BHLHA9Q7RTU4 235 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 ASCL5Q7RTU5 278 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 ARHGAP18Q8N392 663 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 SECISBP2LQ93073 1101 aaKnown RBP13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 NKD2Q969F2 451 aaPredicted RBP13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 EXOC4Q96A65 974 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 NDST4Q9H3R1 872 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 SIX2Q9NPC8 291 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 APEX2Q9UBZ4 518 aa13.38□□□□□ -0.27
PRPF40A-203ENST00000448428 PRR23AA6NEV1 266 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 BECN2A8MW95 431 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 KCNJ18B7U540 433 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 M0QYV0 167 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 PIK3R2O00459 728 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 RNF40O75150 1001 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ADH1CP00326 375 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 LCP1P13796 627 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 HOXC13P31276 330 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 RGS7P49802 495 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 GOLGA8FQ08AF8 430 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 GOLGA8DPQ0D2H9 430 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 KCNMA1Q12791 1236 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 EFEMP1Q12805 493 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 KCNJ12Q14500 433 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 PPP2R5DQ14738 602 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 TCP11X2Q5H9J9 407 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 DPY19L2P1Q6NXN4 242 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ZC3H14Q6PJT7 736 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 TADA2BQ86TJ2 420 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 TMEM25Q86YD3 366 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 MIB1Q86YT6 1006 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ZBTB44Q8NCP5 570 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ENOX1Q8TC92 643 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ZNF606Q8WXB4 792 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ATRIPQ8WXE1 791 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 FAM81BQ96LP2 452 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 CDK5RAP1Q96SZ6 601 aaKnown RBP13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 SEMA4AQ9H3S1 761 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ACP6Q9NPH0 428 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 SPHK2Q9NRA0 654 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 ZSCAN32Q9NX65 697 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 NFE2L3Q9Y4A8 694 aa13.37□□□□□ -0.27
PRPF40A-203ENST00000448428 YJEFN3A6XGL0 299 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 E7ENQ6 273 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 K7EQS6 105 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 K7ESF4 209 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 STC2O76061 302 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 LETM1O95202 739 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 PAPSS2O95340 614 aaPredicted RBP13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 MBD3O95983 291 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 KLKB1P03952 638 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 ADH5P11766 374 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 USP8P40818 1118 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 GPD2P43304 727 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 COG7P83436 770 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 GAD2Q05329 585 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 MESP2Q0VG99 397 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 FBXO43Q4G163 708 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 BSPRYQ5W0U4 402 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 BTBD8Q5XKL5 378 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 DENND1BQ6P3S1 775 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 SASS6Q6UVJ0 657 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 Q6ZNB5 142 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 C12orf40Q86WS4 652 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 SIX6OS1Q8N1H7 587 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 SCML4Q8N228 414 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 NAT16Q8N8M0 369 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 SHC3Q92529 594 aa13.36□□□□□ -0.27
PRPF40A-203ENST00000448428 PNKPQ96T60 521 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms