RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 NXF3Q9H4D5 531 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 DHX33Q9H6R0 707 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ADA2Q9NZK5 511 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 CST3P01034 146 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 CYP1A2P05177 515 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 SSTR1P30872 391 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ANGPTL8Q6UXH0 198 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 PCDHB18PQ96TA0 734 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 UPF3AQ9H1J1 476 aaKnown RBP12.72□□□□□ -0.37
TCOF1-205ENST00000439160 XPNPEP1Q9NQW7 623 aa12.72□□□□□ -0.37
TCOF1-205ENST00000439160 ARFGEF2Q9Y6D5 1785 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ZNF142P52746 1687 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 H7C4K7 107 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ZWINTO95229 277 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 LRG1P02750 347 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 HADHAP40939 763 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 LINC00523Q86TU6 105 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 PALB2Q86YC2 1186 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ARID3BQ8IVW6 561 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 AENQ8WTP8 325 aaKnown RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ALG3Q92685 438 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 E2F7Q96AV8 911 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ZBTB18Q99592 522 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 APBA2Q99767 749 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 GPR63Q9BZJ6 419 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 DMAP1Q9NPF5 467 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 SIGLEC16A6NMB1 481 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 PTPN1P18031 435 aaKnown RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ELK3P41970 407 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 SP3Q02447 781 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 CHI3L2Q15782 390 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 TRPM8Q7Z2W7 1104 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 ZDHHC17Q8IUH5 632 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 KATNAL2Q8IYT4 538 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 KCNV2Q8TDN2 545 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 MBOAT7Q96N66 472 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 MANSC1Q9H8J5 431 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 OLA1Q9NTK5 396 aaKnown RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 KANSL3Q9P2N6 904 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.71□□□□□ -0.37
TCOF1-205ENST00000439160 SCN11AQ9UI33 1791 aa12.71□□□□□ -0.37
TCOF1-205ENST00000439160 DNALI1O14645 258 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 KIF3CO14782 793 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 RIPK2O43353 540 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 MBL2P11226 248 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 PRKAR2AP13861 404 aaKnown RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 CCR1P32246 355 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 BMPR2Q13873 1038 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 FOXR1Q6PIV2 292 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 KCNT2Q6UVM3 1135 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 MYCBPAPQ8TBZ2 947 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 CALML6Q8TD86 181 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 TRPM5Q9NZQ8 1165 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 ST3GAL5Q9UNP4 418 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 SHOC2Q9UQ13 582 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 SETD1AO15047 1707 aaKnown RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 MAP3K7O43318 606 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 URODP06132 367 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 MYBL2P10244 700 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 PIGZQ86VD9 579 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 TTC30BQ8N4P2 665 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 FAM136AQ96C01 138 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 CINPQ9BW66 212 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-205ENST00000439160 DYRK4Q9NR20 520 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 NAALADL1Q9UQQ1 740 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 C2CD2Q9Y426 696 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 SPEF2Q9C093 1822 aa12.71□□□□□ -0.38
TCOF1-205ENST00000439160 MYL2P10916 166 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 KDELR1P24390 212 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 AKT1P31749 480 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 MRPS6P82932 125 aaKnown RBP12.7□□□□□ -0.38
TCOF1-205ENST00000439160 AMPD2Q01433 879 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 SLC39A12Q504Y0 691 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 PRELID2Q8N945 189 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 LENG1Q96BZ8 264 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-205ENST00000439160 VCX3AQ9NNX9 186 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 GDF3Q9NR23 364 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 RBM22Q9NW64 420 aaKnown RBP eCLIP12.7□□□□□ -0.384e-6■■■■□ 24.3
TCOF1-205ENST00000439160 ANGPTL2Q9UKU9 493 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 PCDHB5Q9Y5E4 795 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 MAFBQ9Y5Q3 323 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-205ENST00000439160 CD52P31358 61 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 CORO7P57737 925 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 CUL3Q13618 768 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 PRUNE1Q86TP1 453 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 UNC93AQ86WB7 457 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 TSPAN17Q96FV3 270 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 C12orf42Q96LP6 360 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 GMLQ99445 158 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 TRIM54Q9BYV2 358 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 KLC4Q9NSK0 619 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 SMPD4Q9NXE4 827 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 NOP53Q9NZM5 478 aaKnown RBP12.7□□□□□ -0.38
TCOF1-205ENST00000439160 LTFP02788 710 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 ETS1P14921 441 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 RBL1P28749 1068 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 GEMP55040 296 aa12.7□□□□□ -0.38
TCOF1-205ENST00000439160 ST8SIA6P61647 398 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms