RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ASPAP45381 313 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 PGFP49763 221 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 VAMP7P51809 220 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 CLDN10P78369 228 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 ZNF252P-AS1Q0IIN9 211 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 PREPLQ4J6C6 727 aaPredicted RBP15.33■□□□□ 0.04
SDC1-204ENST00000429035 GRAMD4Q6IC98 578 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TPGS1Q6ZTW0 290 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 NUDT18Q6ZVK8 323 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TRMT11Q7Z4G4 463 aaKnown RBP15.33■□□□□ 0.04
SDC1-204ENST00000429035 TMEM25Q86YD3 366 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 FRMD1Q8N878 549 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TERB1Q8NA31 727 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TMC2Q8TDI7 906 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 BHMTQ93088 406 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 SPATA32Q96LK8 384 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 COMMD8Q9NX08 183 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 NUDT5Q9UKK9 219 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 RCOR1Q9UKL0 485 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 MAPK8IP1Q9UQF2 711 aa15.33■□□□□ 0.04
SDC1-204ENST00000429035 TM4SF5O14894 197 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 GIPC1O14908 333 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 TRIM24O15164 1050 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 ADAM23O75077 832 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 TBX18O95935 607 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 ASS1P00966 412 aaKnown RBP15.32■□□□□ 0.04
SDC1-204ENST00000429035 KRT13P13646 458 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 ACO1P21399 889 aaKnown RBP15.32■□□□□ 0.04
SDC1-204ENST00000429035 NR2F2P24468 414 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 P2RY2P41231 377 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 SYKP43405 635 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 MAPK8P45983 427 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 GCLMP48507 274 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 KRT85P78386 507 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 FOXC1Q12948 553 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 TRIM61Q5EBN2 209 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 SNX30Q5VWJ9 437 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 LYSMD4Q5XG99 296 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 CLEC20AQ6ZU45 233 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 UNC93AQ86WB7 457 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 ETFBKMTQ8IXQ9 262 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 PHTF2Q8N3S3 785 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 DEFB119Q8N690 84 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 CCDC150Q8NCX0 1101 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 TAF4BQ92750 862 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 TWNKQ96RR1 684 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 BBS2Q9BXC9 721 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 USP25Q9UHP3 1055 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 CHD8Q9HCK8 2581 aa15.32■□□□□ 0.04
SDC1-204ENST00000429035 ASCC3Q8N3C0 2202 aaKnown RBP15.32■□□□□ 0.04
SDC1-204ENST00000429035 A0A1W2PQH9 124 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 CFIP05156 583 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 ZDHHC11BP0C7U3 371 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 ATP5C1P36542 298 aaKnown RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 PTGER3P43115 390 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 BYSLQ13895 437 aaKnown RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 ZNF394Q53GI3 561 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 SH3PXD2AQ5TCZ1 1133 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 EGFLAMQ63HQ2 1017 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 FAM186BQ8IYM0 893 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 OLIG1Q8TAK6 271 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 TAS1R2Q8TE23 839 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 CYFIP2Q96F07 1278 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 XPO6Q96QU8 1125 aaKnown RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 NT5C1AQ9BXI3 368 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 NUSAP1Q9BXS6 441 aaKnown RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 NIF3L1Q9GZT8 377 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 APOBEC3GQ9HC16 384 aaKnown RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 IL37Q9NZH6 218 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 MBD1Q9UIS9 605 aaPredicted RBP15.31■□□□□ 0.04
SDC1-204ENST00000429035 NAGPAQ9UK23 515 aa15.31■□□□□ 0.04
SDC1-204ENST00000429035 FAM92AA1XBS5 289 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 ZBTB24O43167 697 aaPredicted RBP15.3■□□□□ 0.04
SDC1-204ENST00000429035 CHRM1P11229 460 aaPredicted RBP15.3■□□□□ 0.04
SDC1-204ENST00000429035 RARGP13631 454 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 TYRP14679 529 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 CMA1P23946 247 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 NDUFA8P51970 172 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 IRX4P78413 519 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 RPL6Q02878 288 aaKnown RBP15.3■□□□□ 0.04
SDC1-204ENST00000429035 C10orf120Q5SQS8 335 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 C1orf220Q5T0J3 134 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 INTS8Q75QN2 995 aaKnown RBP15.3■□□□□ 0.04
SDC1-204ENST00000429035 MIB1Q86YT6 1006 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 CHPFQ8IZ52 775 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 CRYBG2Q8N1P7 616 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 KLF16Q9BXK1 252 aaPredicted RBP15.3■□□□□ 0.04
SDC1-204ENST00000429035 NMUR1Q9HB89 426 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 CSNK1G1Q9HCP0 422 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 OSER1Q9NX31 292 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 CALCOCO1Q9P1Z2 691 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 RASAL2Q9UJF2 1139 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 SCML2Q9UQR0 700 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 PCDHA5Q9Y5H7 936 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 LAMA1P25391 3075 aa15.3■□□□□ 0.04
SDC1-204ENST00000429035 MYL1P05976 194 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 HMBSP08397 361 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 GABRG2P18507 467 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 NTSR1P30989 418 aa15.29■□□□□ 0.04
SDC1-204ENST00000429035 ATXN3P54252 364 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms