RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 RBP5P82980 135 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CAP1Q01518 475 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 CAV1Q03135 178 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SNCBQ16143 134 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SEPT7Q16181 437 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 KBTBD12Q3ZCT8 623 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 RHBDF2Q6PJF5 856 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TRMT10CQ7L0Y3 403 aaKnown RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 AGGF1Q8N302 714 aaeCLIP8.72□□□□□ -1.01
CD44-208ENST00000428726 AZIN2Q96A70 460 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 TMEM209Q96SK2 561 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 PLCD4Q9BRC7 762 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 FAM167BQ9BTA0 163 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 STMN4Q9H169 189 aaPredicted RBP8.72□□□□□ -1.01
CD44-208ENST00000428726 TRABDQ9H4I3 376 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 SAMD15Q9P1V8 674 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 HCSTQ9UBK5 93 aa8.72□□□□□ -1.01
CD44-208ENST00000428726 A0A0G2JND7 137 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 SIGLEC16A6NMB1 481 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 DNALI1O14645 258 aaPredicted RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 MCF2LO15068 1137 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 SOAT2O75908 522 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 FSBPO95073 299 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 TRUB2O95900 331 aaKnown RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 USP17L7P0C7H9 530 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 GPD1P21695 349 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 PROZP22891 400 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 GCAP28676 217 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 SDC4P31431 198 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 PEX19P40855 299 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 SCNN1GP51170 649 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 C16orf46Q6P387 395 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 GPRIN1Q7Z2K8 1008 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 APBB1IPQ7Z5R6 666 aaPredicted RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 OSTM1Q86WC4 334 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 ALLCQ8N6M5 410 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 C2orf69Q8N8R5 385 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 PCDH19Q8TAB3 1148 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 PRR11Q96HE9 360 aaPredicted RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 TBCBQ99426 244 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 NPHS2Q9NP85 383 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 GGA2Q9UJY4 613 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 ABT1Q9ULW3 272 aaKnown RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 BARX2Q9UMQ3 279 aaPredicted RBP8.71□□□□□ -1.01
CD44-208ENST00000428726 GABRQQ9UN88 632 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 CEP290O15078 2479 aa8.71□□□□□ -1.01
CD44-208ENST00000428726 A0A1B0GUA9 196 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 MYBPHLA2RUH7 354 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 C3orf70A6NLC5 250 aaPredicted RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 FAM72CH0Y354 149 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 TNPO2O14787 897 aaKnown RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 METTL18O95568 372 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 LSM8O95777 96 aaKnown RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 AGTP01019 485 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 EIF4BP23588 611 aaKnown RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 MMP13P45452 471 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 FAM72AQ5TYM5 149 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 FAM72DQ6L9T8 149 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 LVRNQ6Q4G3 990 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 LRRC6Q86X45 466 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 FAM72BQ86X60 149 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 DEFB106AQ8N104 65 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 UBR7Q8N806 425 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 CCDC197Q8NCU1 140 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 CENPTQ96BT3 561 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 RBM41Q96IZ5 413 aaKnown RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 ROPN1BQ9BZX4 212 aaPredicted RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 SNX25Q9H3E2 840 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 ROPN1Q9HAT0 212 aaPredicted RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 NKIRAS1Q9NYS0 192 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 G3BP2Q9UN86 482 aaKnown RBP8.71□□□□□ -1.02
CD44-208ENST00000428726 CLUHO75153 1309 aa8.71□□□□□ -1.02
CD44-208ENST00000428726 DICER1Q9UPY3 1922 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 TCRBV5S1A1TA0A578 114 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 C9IYK1 514 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 H0Y3Z8 333 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 ZBED1O96006 694 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 ITGB1P05556 798 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PAX7P23759 505 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 TARSP26639 723 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 CLCNKBP51801 687 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 CLNS1AP54105 237 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 GJA9P57773 515 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 FAAP100Q0VG06 881 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PIGHQ14442 188 aaPredicted RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 MFSD10Q14728 455 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 KIAA0319Q5VV43 1072 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 TRIM68Q6AZZ1 485 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PIGZQ86VD9 579 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SUGP1Q8IWZ8 645 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 BBOF1Q8ND07 529 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 C3orf58Q8NDZ4 430 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PPTC7Q8NI37 304 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 FAM136AQ96C01 138 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 FAM111AQ96PZ2 611 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PITPNM3Q9BZ71 974 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 GCOM2Q9BZD3 368 aaPredicted RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 ZNF518BQ9C0D4 1074 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 KPNA7A9QM74 516 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 NRP1O14786 923 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms