RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TSPY8P0CW00 308 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 PF4V1P10720 104 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 HOXD10P28358 340 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 SLC6A4P31645 630 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 PRMT2P55345 433 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 IRX3P78415 501 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 KLF10Q13118 480 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 SP140Q13342 867 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 IMMTQ16891 758 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 SHROOM1Q2M3G4 852 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TREML2Q5T2D2 321 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CASC1Q6TDU7 716 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CATSPERGQ6ZRH7 1159 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CMTR2Q8IYT2 770 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CPA6Q8N4T0 437 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 ZFP28Q8NHY6 868 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 IFI44Q8TCB0 444 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 MAP4K1Q92918 833 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TTC14Q96N46 770 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 P2RX7Q99572 595 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF703Q9H7S9 590 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 NRDE2Q9H7Z3 1164 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 VCPKMTQ9H867 229 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TCP11L1Q9NUJ3 509 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 AURKAIP1Q9NWT8 199 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 GEMIN8Q9NWZ8 242 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 MTMR4Q9NYA4 1195 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CLIP2Q9UDT6 1046 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CPA4Q9UI42 421 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF180Q9UJW8 692 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 ADGRA2Q96PE1 1338 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 UNC119BA6NIH7 251 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 WDR46O15213 610 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 RANBP6O60518 1105 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 RECQL4O94761 1208 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 TTLL1O95922 423 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CD1AP06126 327 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 NOVP48745 357 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CDC42EP1Q00587 391 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CREMQ03060 361 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 COG2Q14746 738 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 LRRC41Q15345 812 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 FAM102AQ5T9C2 384 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 CHPFQ8IZ52 775 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 SLC16A11Q8NCK7 471 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 SMCR8Q8TEV9 937 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 ESR2Q92731 530 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 NUP88Q99567 741 aaPredicted RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 GTPBP4Q9BZE4 634 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 KRT23Q9C075 422 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 MANSC1Q9H8J5 431 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 MORF4L1Q9UBU8 362 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 RABGAP1Q9Y3P9 1069 aa2.87□□□□□ -1.95
VPS13A-208ENST00000423463 GOLGB1Q14789 3259 aaKnown RBP2.87□□□□□ -1.95
VPS13A-208ENST00000423463 F5H6K3 240 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 FZD7O75084 574 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TOP1P11387 765 aaKnown RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 MYH1P12882 1939 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 ZSCAN20P17040 1043 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 VCAM1P19320 739 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 PSMC4P43686 418 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 ADKP55263 362 aaKnown RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 HAND2P61296 217 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 CCNA1P78396 465 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 KLRC3Q07444 240 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TRDNQ13061 729 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 ZNF267Q14586 743 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 UBXN2BQ14CS0 331 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 FAM110CQ1W6H9 321 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 FAM102BQ5T8I3 360 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 FOCADQ5VW36 1801 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 DRICH1Q6PGQ1 229 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 FBXO46Q6PJ61 603 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 SKAP1Q86WV1 359 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 DGKHQ86XP1 1220 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 PLXDC1Q8IUK5 500 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TBC1D10CQ8IV04 446 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TCEAL8Q8IYN2 117 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 GMCL1P1Q8NEA9 526 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 GPRC5AQ8NFJ5 357 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 OR56A1Q8NGH5 318 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 CD99L2Q8TCZ2 262 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 CASKIN2Q8WXE0 1202 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 JPH3Q8WXH2 748 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 ANKS1AQ92625 1134 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 HSPBAP1Q96EW2 488 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 LRGUKQ96M69 825 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 PLIN4Q96Q06 1357 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 C11orf54Q9H0W9 315 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 IL25Q9H293 177 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TMPRSS5Q9H3S3 457 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 RPAP3Q9H6T3 665 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 IL17RBQ9NRM6 502 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 PNMA8BQ9ULN7 279 aaPredicted RBP2.86□□□□□ -1.95
VPS13A-208ENST00000423463 ANKRD6Q9Y2G4 727 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 TRIM17Q9Y577 477 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 SIPA1L1O43166 1804 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 GRM6O15303 877 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 PJA2O43164 708 aa2.86□□□□□ -1.95
VPS13A-208ENST00000423463 EPB41L2O43491 1005 aaKnown RBP2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms