RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 ADCK5Q3MIX3 580 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 CD300EQ496F6 205 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 AKNAD1Q5T1N1 836 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 VPS53Q5VIR6 699 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 PPP4R3AQ6IN85 833 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SYCE2Q6PIF2 218 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 CLNKQ7Z7G1 428 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 AOPEPQ8N6M6 819 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC17A8Q8NDX2 589 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 NSUN7Q8NE18 718 aaKnown RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 TOR1AIP2Q8NFQ8 470 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 NELL1Q92832 810 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 FUBP1Q96AE4 644 aaKnown RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 FBXL20Q96IG2 436 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZSCAN31Q96LW9 406 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 EYA3Q99504 573 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SMAD5Q99717 465 aaKnown RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ANP32EQ9BTT0 268 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ARMT1Q9H993 441 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 NAP1L2Q9ULW6 460 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC45A2Q9UMX9 530 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ATP6V0A2Q9Y487 856 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 IPPQ9Y573 584 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC4A4Q9Y6R1 1079 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZMYM6O95789 1325 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 MYH6P13533 1939 aa4.38□□□□□ -1.71
HMGB3P20-201ENST00000417997 E7EWF7 191 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 MGST3O14880 152 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 YY2O15391 372 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 SGTAO43765 313 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 RPLP2P05387 115 aaKnown RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 KCNA2P16389 499 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 RARRES1P49788 294 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 ELLP55199 621 aaPredicted RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 NUCB2P80303 420 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 RAB39AQ14964 217 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 PTPN21Q16825 1174 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 FLYWCH1Q4VC44 716 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 SP5Q6BEB4 398 aaPredicted RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 TMED8Q6PL24 325 aaPredicted RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 C15orf52Q6ZUT6 534 aaKnown RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCDC83Q8IWF9 413 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 MIGA1Q8NAN2 632 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRPF38AQ8NAV1 312 aaKnown RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 NCOA7Q8NI08 942 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 TBC1D16Q8TBP0 767 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 TBC1D22AQ8WUA7 517 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 VOPP1Q96AW1 172 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 COA7Q96BR5 231 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 FAM84BQ96KN1 310 aaPredicted RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 TCEANC2Q96MN5 208 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 TTC14Q96N46 770 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 KLHL32Q96NJ5 620 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 CRNKL1Q9BZJ0 848 aaKnown RBP4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 CD209Q9NNX6 404 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 IL17RBQ9NRM6 502 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 INTS13Q9NVM9 706 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 JKAMPQ9P055 326 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 SMC3Q9UQE7 1217 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 COX11Q9Y6N1 276 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 SALL1Q9NSC2 1324 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 ARFGEF1Q9Y6D6 1849 aa4.37□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRAMEF33A0A0G2JMD5 474 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 GABRDO14764 452 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ORC4O43929 436 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRAMEF10O60809 474 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC43A1O75387 559 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 BAG3O95817 575 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 LDHCP07864 332 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC3A2P08195 630 aaKnown RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF37AP17032 561 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 PTMSP20962 102 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 EDNRBP24530 442 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SMARCA1P28370 1054 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 PRDX5P30044 214 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHRNA5P30532 468 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 MCM5P33992 734 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 C21orf58P58505 322 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 RPS7P62081 194 aaKnown RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 MECOMQ03112 1051 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TLE1Q04724 770 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 PIGFQ07326 219 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 CUL4AQ13619 759 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 CCDC93Q567U6 631 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TTLL5Q6EMB2 1281 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TSHZ1Q6ZSZ6 1077 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF365Q70YC5 407 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 CERS3Q8IU89 383 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 LNX2Q8N448 690 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TMIEQ8NEW7 156 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 IL17RDQ8NFM7 739 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TDRD7Q8NHU6 1098 aaKnown RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 SLC30A5Q8TAD4 765 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 ZNF384Q8TF68 577 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 NTN5Q8WTR8 489 aaPredicted RBP4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 TFAP2BQ92481 460 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 CHMP4CQ96CF2 233 aa4.36□□□□□ -1.71
HMGB3P20-201ENST00000417997 STRBPQ96SI9 672 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms