RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CDH23Q9H251 3354 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 KRIT1O00522 736 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 XPO1O14980 1071 aaKnown RBP14.07□□□□□ -0.16
LIMS1-204ENST00000409441 RAD51CO43502 376 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 RFPL2O75678 378 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 GLI1P08151 1106 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 FOSL2P15408 326 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 ATF6P18850 670 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 EPHB3P54753 998 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 GUCY2DQ02846 1103 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 CUL1Q13616 776 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 CLEC16AQ2KHT3 1053 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 ALS2CLQ60I27 953 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 ACAD10Q6JQN1 1059 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 PPP1R2P3Q6NXS1 205 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 PMF1Q6P1K2 205 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 TRIM72Q6ZMU5 477 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 CCDC26Q8TAB7 109 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 CPA5Q8WXQ8 436 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 TRIM11Q96F44 468 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 SPATA17Q96L03 361 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 ALG6Q9Y672 507 aa14.07□□□□□ -0.16
LIMS1-204ENST00000409441 FAM170AA1A519 330 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 HHLA1C9JL84 531 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 LSM8O95777 96 aaKnown RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 GLP2RO95838 553 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 LRG1P02750 347 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CYP1A1P04798 512 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CDH5P33151 784 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 RGS7P49802 495 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 RNASE9P60153 205 aaKnown RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 PLD1Q13393 1074 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CCDC85BQ15834 202 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CTC1Q2NKJ3 1217 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 NAA35Q5VZE5 725 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 ZNF771Q7L3S4 317 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 MAATS1Q7Z4T9 603 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 KLHL7Q8IXQ5 586 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 MREGQ8N565 214 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 C12orf76Q8N812 135 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 C1orf131Q8NDD1 294 aaKnown RBP14.06□□□□□ -0.16
LIMS1-204ENST00000409441 STK32AQ8WU08 396 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CEP295NLQ96MC4 621 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 CYTH4Q9UIA0 394 aa14.06□□□□□ -0.16
LIMS1-204ENST00000409441 GOLGA6L10A0A0M3HER8 536 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 CCDC195A0A1B0GUA6 201 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 GOLGA6BA6NDN3 693 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 SLC38A8A6NNN8 435 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 TNFRSF10BO14763 440 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 CCL16O15467 120 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 HNRNPA1P09651 372 aaKnown RBP eCLIP14.05□□□□□ -0.16
LIMS1-204ENST00000409441 SRGAP2BP0DMP2 458 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 MYBL1P10243 752 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 UNGP13051 313 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-204ENST00000409441 NOMO3P69849 1222 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 EP400NLQ6ZTU2 488 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 DNAJB7Q7Z6W7 309 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-204ENST00000409441 NUP93Q8N1F7 819 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 STKLD1Q8NE28 680 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 SCAMP5Q8TAC9 235 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 CASKIN2Q8WXE0 1202 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 KCTD13Q8WZ19 329 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 ZNF653Q96CK0 615 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 HSFY1Q96LI6 401 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 ZNF512Q96ME7 567 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-204ENST00000409441 SLC4A5Q9BY07 1137 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 LRRC4Q9HBW1 653 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 PNPLA8Q9NP80 782 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 AVENQ9NQS1 362 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-204ENST00000409441 DZANK1Q9NVP4 752 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 ZDHHC7Q9NXF8 308 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 CLDND1Q9NY35 253 aa14.05□□□□□ -0.16
LIMS1-204ENST00000409441 PIK3R2O00459 728 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SART1O43290 800 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SYF2O95926 243 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CTNNA2P26232 953 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 HOXA9P31269 272 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CARSP49589 748 aaKnown RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 PDCLQ13371 301 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 MTMR3Q13615 1198 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 COL19A1Q14993 1142 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 VEPH1Q14D04 833 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 TAF12Q16514 161 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ANKRD54Q6NXT1 300 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 DENND5BQ6ZUT9 1274 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 GPRIN1Q7Z2K8 1008 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 TMEM110Q86TL2 294 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ITIH5Q86UX2 942 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ERICH1Q86X53 443 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 GOLGA6L1Q8N7Z2 621 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ZNF564Q8TBZ8 553 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 PPM1EQ8WY54 764 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 PRKD2Q9BZL6 878 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-204ENST00000409441 CLEC1BQ9P126 229 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 VPS18Q9P253 973 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ADAM21Q9UKJ8 722 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 ASB3Q9Y575 518 aa14.04□□□□□ -0.16
LIMS1-204ENST00000409441 SZT2Q5T011 3432 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms