RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 SMPD4Q9NXE4 827 aa21.29■■□□□ 1
PTCD3-202ENST00000409326 AIPL1Q9NZN9 384 aa21.29■■□□□ 1
PTCD3-202ENST00000409326 TJP2Q9UDY2 1190 aa21.29■■□□□ 1
PTCD3-202ENST00000409326 LEFTY2O00292 366 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 ZNF263O14978 683 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 CHADO15335 359 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 SNX16P57768 344 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 NOMO3P69849 1222 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 PLCB2Q00722 1185 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 PFKPQ01813 784 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 MTF1Q14872 753 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 ASIC2Q16515 512 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 C10orf120Q5SQS8 335 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 SFMBT2Q5VUG0 894 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 BSPRYQ5W0U4 402 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 BTBD8Q5XKL5 378 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 TRIM72Q6ZMU5 477 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 HFE2Q6ZVN8 426 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 KIAA1958Q8N8K9 716 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 IPO4Q8TEX9 1081 aaKnown RBP21.28■■□□□ 1
PTCD3-202ENST00000409326 DNASE1L2Q92874 299 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 IRF7Q92985 503 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 EPHX3Q9H6B9 360 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 BRD9Q9H8M2 597 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 ABCC13Q9NSE7 274 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 THG1LQ9NWX6 298 aaKnown RBP21.28■■□□□ 1
PTCD3-202ENST00000409326 DNMT3LQ9UJW3 386 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 NUDT5Q9UKK9 219 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 CAPN11Q9UMQ6 739 aa21.28■■□□□ 1
PTCD3-202ENST00000409326 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.28■■□□□ 13e-10■□□□□ 8.5
PTCD3-202ENST00000409326 ARNTLO00327 626 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 AP5Z1O43299 807 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 LTFP02788 710 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 CYP1A1P04798 512 aaPredicted RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 GYPCP04921 128 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 E4F1Q66K89 784 aaPredicted RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 SPECC1LQ69YQ0 1117 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 TRIM67Q6ZTA4 783 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 RSRC2Q7L4I2 434 aaKnown RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 VSTM4Q8IW00 320 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 GOLGA1Q92805 767 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 AGPAT1Q99943 283 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 KLF16Q9BXK1 252 aaPredicted RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 NUCKS1Q9H1E3 243 aaKnown RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 TRPV5Q9NQA5 729 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 OLA1Q9NTK5 396 aaKnown RBP21.27■■□□□ 1
PTCD3-202ENST00000409326 WNT16Q9UBV4 365 aa21.27■■□□□ 1
PTCD3-202ENST00000409326 MDM4O15151 490 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 ERBB2P04626 1255 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 PRKCIP41743 596 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 ZBED6P86452 979 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 NAA35Q5VZE5 725 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 CC2D1AQ6P1N0 951 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-202ENST00000409326 MSANTD4Q8NCY6 345 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 TTC16Q8NEE8 873 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 ZNF397Q8NF99 534 aaPredicted RBP21.26■□□□□ 0.99
PTCD3-202ENST00000409326 EDEM1Q92611 657 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 ASIC4Q96FT7 647 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 ZFYVE19Q96K21 471 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 SYNCQ9H7C4 482 aa21.26■□□□□ 0.99
PTCD3-202ENST00000409326 GABRB2P47870 512 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 GOLGA8FQ08AF8 430 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 GOLGA8DPQ0D2H9 430 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 EFEMP1Q12805 493 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 TRIM14Q14142 442 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 FAM183BPQ6ZVS7 135 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 BEND5Q7L4P6 421 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 ERICH1Q86X53 443 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 ZDHHC17Q8IUH5 632 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 RNF139Q8WU17 664 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 OSCP1Q8WVF1 389 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 CPLX3Q8WVH0 158 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 CPA5Q8WXQ8 436 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 SYN2Q92777 582 aaPredicted RBP21.25■□□□□ 0.99
PTCD3-202ENST00000409326 FAM149B1Q96BN6 582 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 PCDHB18PQ96TA0 734 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 FAM83CQ9BQN1 747 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 SYT11Q9BT88 431 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 TRIM62Q9BVG3 475 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 TRIM5Q9C035 493 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 GKN1Q9NS71 199 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 CFAP97Q9P2B7 532 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 RASAL2Q9UJF2 1139 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 FBXL21Q9UKT6 434 aa21.25■□□□□ 0.99
PTCD3-202ENST00000409326 LUC7L2Q9Y383 392 aaKnown RBP21.25■□□□□ 0.99
PTCD3-202ENST00000409326 COL4A3Q01955 1670 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 MYOFQ9NZM1 2061 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 UNGP13051 313 aaPredicted RBP21.24■□□□□ 0.99
PTCD3-202ENST00000409326 MSANTD2Q6P1R3 559 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 OLFML1Q6UWY5 402 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 MIB1Q86YT6 1006 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 C18orf8Q96DM3 657 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 PIWIL1Q96J94 861 aaKnown RBP21.24■□□□□ 0.99
PTCD3-202ENST00000409326 ASNSD1Q9NWL6 643 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 MARCH2Q9P0N8 246 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 STRIP2Q9ULQ0 834 aa21.24■□□□□ 0.99
PTCD3-202ENST00000409326 E2F8A0AVK6 867 aa21.23■□□□□ 0.99
PTCD3-202ENST00000409326 TMEM221A6NGB7 291 aa21.23■□□□□ 0.99
PTCD3-202ENST00000409326 M0R296 226 aa21.23■□□□□ 0.99
PTCD3-202ENST00000409326 FYNP06241 537 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms