RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 APOPT1Q96IL0 206 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 L3MBTL3Q96JM7 780 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 DEPDC7Q96QD5 511 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CHP1Q99653 195 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 VTA1Q9NP79 307 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 AGPAT3Q9NRZ7 376 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 KBTBD4Q9NVX7 518 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ADPRHL2Q9NX46 363 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ITGA11Q9UKX5 1188 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RNF112Q9ULX5 631 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MAGED2Q9UNF1 606 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 FNDC3AQ9Y2H6 1198 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SNX9Q9Y5X1 595 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 FRMPD1Q5SYB0 1578 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CLUHO75153 1309 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 DDHD2O94830 711 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 LDLRP01130 860 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PGAM1P18669 254 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NMT1P30419 496 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GNL1P36915 607 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 IL12RB1P42701 662 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MAPK8P45983 427 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GYS2P54840 703 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 BNIP2Q12982 314 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NFYCQ13952 458 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ACCSLQ4AC99 568 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ATP6AP1LQ52LC2 224 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CDKAL1Q5VV42 579 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ARHGAP17Q68EM7 881 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PMF1Q6P1K2 205 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 C4orf33Q8N1A6 199 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 AGBL3Q8NEM8 1001 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 OTULINQ96BN8 352 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NSMCE2Q96MF7 247 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 QKIQ96PU8 341 aaKnown RBP eCLIP6.28□□□□□ -1.47e-7■■■■□ 21.5
SCN1A-203ENST00000409050 PPP1R10Q96QC0 940 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 OSBPL6Q9BZF3 934 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SIK2Q9H0K1 926 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 QTRT2Q9H974 415 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PDGFCQ9NRA1 345 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 AASDHPPTQ9NRN7 309 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 IARS2Q9NSE4 1012 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 BTBD7Q9P203 1132 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MOSPD1Q9UJG1 213 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CROTQ9UKG9 612 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NDUFAF1Q9Y375 327 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GLI2P10070 1586 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RBM47A0AV96 593 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MEI4A8MW99 385 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 KPNA5O15131 536 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 UBDO15205 165 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TADA2AO75478 443 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CNPP09543 421 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RRM1P23921 792 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ACAT1P24752 427 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 KLRC1P26715 233 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 IL12AP29459 219 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PRDX5P30044 214 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ALDH1A3P47895 512 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 POLD2P49005 469 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 FMR1Q06787 632 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SNAPC2Q13487 334 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TRIQKQ629K1 86 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM26Q6ZUK4 368 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 C4orf19Q8IY42 314 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NUP93Q8N1F7 819 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF280CQ8ND82 737 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ENKURQ8TC29 256 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 HDAC7Q8WUI4 952 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PPP1R14BQ96C90 147 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SERHL2Q9H4I8 314 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RPAP3Q9H6T3 665 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SERHLQ9NQF3 203 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 RPS6KB2Q9UBS0 482 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PIN4Q9Y237 131 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GSTK1Q9Y2Q3 226 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 GPR182O15218 404 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SEC24DO94855 1032 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF23P17027 643 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CYP2A7P20853 494 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CES1P23141 567 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 PPIBP23284 216 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SNAP25P60880 206 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CDH17Q12864 832 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 DGKDQ16760 1214 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CYP51A1Q16850 503 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 KIZQ2M2Z5 673 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ARMC4Q5T2S8 1044 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ARCQ7LC44 396 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TLK2Q86UE8 772 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 MAGEC3Q8TD91 643 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 CASKIN2Q8WXE0 1202 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 THUMPD3Q9BV44 507 aaKnown RBP6.28□□□□□ -1.4
SCN1A-203ENST00000409050 SPATA5L1Q9BVQ7 753 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 NLNQ9BYT8 704 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM260Q9NX78 707 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 ZNRF3Q9ULT6 936 aa6.28□□□□□ -1.4
SCN1A-203ENST00000409050 IPPQ9Y573 584 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms