RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CHD7Q9P2D1 2997 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 GRID2IPA4D2P6 1211 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 SLC38A8A6NNN8 435 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 HIDE1A8MVS5 230 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 MIF4GDA9UHW6 222 aaKnown RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 DAB1O75553 588 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 SOAT2O75908 522 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 PROSCO94903 275 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 GJB6O95452 261 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 LTFP02788 710 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 RFC1P35251 1148 aaPredicted RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 RPL7AP62424 266 aaKnown RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 TFF2Q03403 129 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TWF1Q12792 350 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 ACAP1Q15027 740 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 RPS6KA1Q15418 735 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 PPM1LQ5SGD2 360 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 RTL10Q7L3V2 364 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 RSRC2Q7L4I2 434 aaKnown RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 ARCQ7LC44 396 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 GPRIN1Q7Z2K8 1008 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TADA2BQ86TJ2 420 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 MON1AQ86VX9 555 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TTC9BQ8N6N2 239 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 EMC1Q8N766 993 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 CLEC4CQ8WTT0 213 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 RXFP2Q8WXD0 754 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 ZNF512Q96ME7 567 aaPredicted RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 ASB2Q96Q27 587 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 GCNAQ96QF7 691 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 CNPY3Q9BT09 278 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 PLEKHA4Q9H4M7 779 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TLE6Q9H808 572 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TLR8Q9NR97 1041 aaKnown RBP14.87□□□□□ -0.03
SKA1-202ENST00000398452 ABCC13Q9NSE7 274 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 TMEM51Q9NW97 253 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 SALL4Q9UJQ4 1053 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 SCML2Q9UQR0 700 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 ASB3Q9Y575 518 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 MTCH2Q9Y6C9 303 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 USP3Q9Y6I4 520 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 VCANP13611 3396 aa14.87□□□□□ -0.03
SKA1-202ENST00000398452 SEC24AO95486 1093 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 FTCDO95954 541 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 C8AP07357 584 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SPATA31D3P0C874 917 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SRGAP2BP0DMP2 458 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 NCAM1P13591 858 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 DNAJB1P25685 340 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 GBP1P32455 592 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 MAN1A1P33908 653 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 NOS2P35228 1153 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 IRS1P35568 1242 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 CETN2P41208 172 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 MATKP42679 507 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 ZNF143P52747 638 aaPredicted RBP14.86□□□□□ -0.03
SKA1-202ENST00000398452 YWHAGP61981 247 aaKnown RBP eCLIP14.86□□□□□ -0.03
SKA1-202ENST00000398452 DCAF6Q58WW2 860 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 PPP1R15BQ5SWA1 713 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 PM20D1Q6GTS8 502 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SPATA31D4Q6ZUB0 917 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SND1Q7KZF4 910 aaKnown RBP eCLIP14.86□□□□□ -0.03
SKA1-202ENST00000398452 DEFB106AQ8N104 65 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 STKLD1Q8NE28 680 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 JOSD2Q8TAC2 188 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SCAMP5Q8TAC9 235 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 SLC7A14Q8TBB6 771 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 GPR152Q8TDT2 470 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 GDPD5Q8WTR4 605 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 ATXN2LQ8WWM7 1075 aaKnown RBP14.86□□□□□ -0.03
SKA1-202ENST00000398452 BTBD6Q96KE9 485 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 CDK5RAP1Q96SZ6 601 aaKnown RBP14.86□□□□□ -0.03
SKA1-202ENST00000398452 NACA2Q9H009 215 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 TMEM30AQ9NV96 361 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 TMEM59LQ9UK28 342 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 FBXW11Q9UKB1 542 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 ALG6Q9Y672 507 aa14.86□□□□□ -0.03
SKA1-202ENST00000398452 TCRBV5S1A1TA0A578 114 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 CCDC66A2RUB6 948 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 C2CD4BA6NLJ0 364 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 YJEFN3A6XGL0 299 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 E7ENQ6 273 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 TNFRSF10BO14763 440 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 VNN2O95498 520 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 ATF6P18850 670 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 COMTP21964 271 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 PPP3CCP48454 512 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 SULT1E1P49888 294 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 CDO1Q16878 200 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 PABPC1LQ4VXU2 614 aaKnown RBP14.85□□□□□ -0.03
SKA1-202ENST00000398452 BSPRYQ5W0U4 402 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 RHOT1Q8IXI2 618 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 ADAMTS19Q8TE59 1207 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 HDAC7Q8WUI4 952 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 OVCA2Q8WZ82 227 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 NECAB3Q96P71 396 aaPredicted RBP14.85□□□□□ -0.03
SKA1-202ENST00000398452 CDCA3Q99618 268 aaPredicted RBP14.85□□□□□ -0.03
SKA1-202ENST00000398452 CRISPLD1Q9H336 500 aa14.85□□□□□ -0.03
SKA1-202ENST00000398452 OLA1Q9NTK5 396 aaKnown RBP14.85□□□□□ -0.03
SKA1-202ENST00000398452 TRPM5Q9NZQ8 1165 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms