RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 CHRM1P11229 460 aaPredicted RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 CDH5P33151 784 aaPredicted RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SERPINB4P48594 390 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 TMEM154Q6P9G4 183 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 DARS2Q6PI48 645 aaKnown RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 XYLT1Q86Y38 959 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 FBXO41Q8TF61 875 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SLC44A1Q8WWI5 657 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 CLPTM1LQ96KA5 538 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PARP14Q460N5 1801 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 MCF2LO15068 1137 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 ARF4P18085 180 aaPredicted RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PHKA2P46019 1235 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PPIL2Q13356 520 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 THEMIS2Q5TEJ8 643 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SCYL2Q6P3W7 929 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PLPPR4Q7Z2D5 763 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SESTD1Q86VW0 696 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 TREML1Q86YW5 311 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 CCDC33Q8N5R6 958 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 C12orf29Q8N999 325 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SCG3Q8WXD2 468 aaKnown RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 OXNAD1Q96HP4 312 aaPredicted RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SRPK1Q96SB4 655 aaKnown RBP16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 LPIN3Q9BQK8 851 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 SLC13A1Q9BZW2 595 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PIDD1Q9HB75 910 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 FETUBQ9UGM5 382 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 PCDHGC3Q9UN70 934 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 TEX264Q9Y6I9 313 aa16.91■□□□□ 0.3
NKX3-1-201ENST00000380871 TRIM49D1C9J1S8 452 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ESRRAP11474 423 aaPredicted RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 TAP1Q03518 808 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 HADHQ16836 314 aaKnown RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 PPP1R2P3Q6NXS1 205 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 PHC3Q8NDX5 983 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 SHKBP1Q8TBC3 707 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 FZD8Q9H461 694 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 IFT122Q9HBG6 1241 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 SETD4Q9NVD3 440 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 USP18Q9UMW8 372 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 APOC4-APOC2K7ER74 178 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 PDHXO00330 501 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 LGR5O75473 907 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 C22orf31O95567 290 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 APOC2P02655 101 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ACADSP16219 412 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 C15orf59Q2T9L4 293 aaPredicted RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 TSNAXIP1Q2TAA8 658 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 TRNP1Q6NT89 227 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 TSHZ1Q6ZSZ6 1077 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 LMNTD2Q8IXW0 634 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 KBTBD2Q8IY47 623 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ARMC2Q8NEN0 867 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 LENG1Q96BZ8 264 aaPredicted RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ACAP3Q96P50 834 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ELOVL4Q9GZR5 314 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 PLAC1Q9HBJ0 212 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 RAB6BQ9NRW1 208 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 FAM49BQ9NUQ9 324 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 GPATCH2LQ9NWQ4 482 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 DLGAP2Q9P1A6 1054 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 CNTN3Q9P232 1028 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 H3BRJ5 948 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ENO1P06733 434 aaKnown RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 SNAPC2Q13487 334 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 THOC5Q13769 683 aaKnown RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 RCN2Q14257 317 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 TAZQ16635 292 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 SPDYAQ5MJ70 313 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 OR6B2Q6IFH4 312 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 GPRC5AQ8NFJ5 357 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ALKBH8Q96BT7 664 aaKnown RBP16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 FAF2Q96CS3 445 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 ZNF518BQ9C0D4 1074 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 CENPFP49454 3210 aa16.9■□□□□ 0.3
NKX3-1-201ENST00000380871 DNAJC25-GNG10A0A024R161 153 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 IQANK1A0A1B0GTG1 560 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 ARHGAP1Q07960 439 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 ZC3H12AQ5D1E8 599 aaKnown RBP16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 TEX9Q8N6V9 391 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 TTC13Q8NBP0 860 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 SPDYE1Q8NFV5 336 aaPredicted RBP16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 FAM136AQ96C01 138 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 HPDLQ96IR7 371 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 C20orf27Q9GZN8 174 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 SMYD2Q9NRG4 433 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 STOML1Q9UBI4 398 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 STRIP2Q9ULQ0 834 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 SIP14410 1827 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 IGKV6-21A0A0C4DH24 114 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 H3BRB1 525 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 PSMG1O95456 288 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 VHLP40337 213 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 AP3M2P53677 418 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 CDH6P55285 790 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 ROR1Q01973 937 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 KCNJ11Q14654 390 aa16.89■□□□□ 0.29
NKX3-1-201ENST00000380871 SMAD1Q15797 465 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms