RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 KIF12Q96FN5 646 aa20.29■□□□□ 0.84
SHROOM1-202ENST00000378676 PNPLA8Q9NP80 782 aa20.29■□□□□ 0.84
SHROOM1-202ENST00000378676 ETNK2Q9NVF9 386 aa20.29■□□□□ 0.84
SHROOM1-202ENST00000378676 DDNO94850 711 aaPredicted RBP20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 ZBED1O96006 694 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 MYCNP04198 464 aaPredicted RBP20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 IREB2P48200 963 aaKnown RBP20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 PDK2Q15119 407 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 PRKD1Q15139 912 aaPredicted RBP20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 PKDCCQ504Y2 493 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 SLC9A4Q6AI14 798 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 ARMCX2Q7L311 632 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 ACOT1Q86TX2 421 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 PPM1NQ8N819 430 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 KCNV2Q8TDN2 545 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 LPIN3Q9BQK8 851 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 TRIM56Q9BRZ2 755 aaKnown RBP20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 KCNK13Q9HB14 408 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 SMYD2Q9NRG4 433 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 CNTN3Q9P232 1028 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 C2CD2Q9Y426 696 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 TRIM49D1C9J1S8 452 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 SPAG6O75602 509 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 TGM2P21980 687 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 CTAGE3PQ8IX95 158 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 KIRREL3Q8IZU9 778 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 CCDC110Q8TBZ0 833 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 NLRP7Q8WX94 980 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 ACAP3Q96P50 834 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 MIPEPQ99797 713 aa20.28■□□□□ 0.84
SHROOM1-202ENST00000378676 C2orf71A6NGG8 1288 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 SPDYE5A6NIY4 337 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 TRAFD1O14545 582 aaPredicted RBP20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 UGT1A9O60656 530 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 STAU1O95793 577 aaKnown RBP20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 CLNS1AP54105 237 aaKnown RBP20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 MAP7D3Q8IWC1 876 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 SULF1Q8IWU6 871 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 SCUBE3Q8IX30 993 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 B3GNT5Q9BYG0 378 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 TRIM55Q9BYV6 548 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 MAGEB5Q9BZ81 275 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 UGT1A7Q9HAW7 530 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 UGT1A10Q9HAW8 530 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 UGT1A8Q9HAW9 530 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 HEY2Q9UBP5 337 aa20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 MYO18AQ92614 2054 aaKnown RBP20.27■□□□□ 0.84
SHROOM1-202ENST00000378676 CXCL11O14625 94 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 PAPSS1O43252 624 aaPredicted RBP20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 OSBPP22059 807 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 SDC4P31431 198 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 HDAC4P56524 1084 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 PPP6R3Q5H9R7 873 aaPredicted RBP20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 MAMDC4Q6UXC1 1216 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 SLC26A11Q86WA9 606 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 CCDC33Q8N5R6 958 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 TEKT4Q8WW24 435 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 MIEF2Q96C03 454 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 RSRC1Q96IZ7 334 aaKnown RBP20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 TMEM120AQ9BXJ8 343 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 FBXO6Q9NRD1 293 aaPredicted RBP20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 ARL8BQ9NVJ2 186 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 ZC3H7BQ9UGR2 993 aaKnown RBP20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 LNPEPQ9UIQ6 1025 aa20.27■□□□□ 0.83
SHROOM1-202ENST00000378676 BCLAF3A2AJT9 711 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 HCRTO43612 131 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 APRTP07741 180 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 PTPN4P29074 926 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SERPINB4P48594 390 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 ATXN1P54253 815 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SATB1Q01826 763 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SLC6A3Q01959 620 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 CBLBQ13191 982 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 BOLA3Q53S33 107 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 TTC39BQ5VTQ0 682 aaPredicted RBP20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 ZNF534Q76KX8 674 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 DCPSQ96C86 337 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SRPK1Q96SB4 655 aaKnown RBP20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SLC4A5Q9BY07 1137 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SAR1AQ9NR31 198 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 KIAA1257Q9ULG3 409 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 KCNH4Q9UQ05 1017 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 ARFIP2P53365 341 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 BMPR2Q13873 1038 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 TAPT1Q6NXT6 567 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 MTHFD1LQ6UB35 978 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 TTC8Q8TAM2 541 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 CLEC4CQ8WTT0 213 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 AFG1LQ8WV93 481 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 USP6NLQ92738 828 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SKA1Q96BD8 255 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 MIS12Q9H081 205 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 TLE6Q9H808 572 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 RNPEPL1Q9HAU8 725 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 SNX9Q9Y5X1 595 aa20.26■□□□□ 0.83
SHROOM1-202ENST00000378676 CFAP69A5D8W1 941 aa20.25■□□□□ 0.83
SHROOM1-202ENST00000378676 HAUS5O94927 633 aa20.25■□□□□ 0.83
SHROOM1-202ENST00000378676 METTL18O95568 372 aa20.25■□□□□ 0.83
SHROOM1-202ENST00000378676 CSH1P0DML2 217 aa20.25■□□□□ 0.83
SHROOM1-202ENST00000378676 CSH2P0DML3 217 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms