RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GLRBP48167 497 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 AMHR2Q16671 573 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 CREG2Q8IUH2 290 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 EIF1ADQ8N9N8 165 aaKnown RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 PHF21AQ96BD5 680 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 TMEM176AQ96HP8 235 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 IMPAD1Q9NX62 359 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 WWOXQ9NZC7 414 aa11.79□□□□□ -0.52
PTPRF-203ENST00000372407 DRG1Q9Y295 367 aaKnown RBP11.79□□□□□ -0.52
PTPRF-203ENST00000372407 DNALI1O14645 258 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 VPS26AO75436 327 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 STAG3L1P0CL83 205 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SERPINB1P30740 379 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 PPP3CCP48454 512 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 FBXW4P57775 412 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 CSTF3Q12996 717 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 NT5DC3Q86UY8 548 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TTC30AQ86WT1 665 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 CCDC60Q8IWA6 550 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 LRRN4CLQ8ND94 238 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 RAET1EQ8TD07 263 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SYTL5Q8TDW5 730 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TATDN2Q93075 761 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 DCLK3Q9C098 648 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 PALMDQ9NP74 551 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SPASTQ9UBP0 616 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 EIF3LQ9Y262 564 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 NFIBO00712 420 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 RARAP10276 462 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 PYGMP11217 842 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 ODC1P11926 461 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 BACE1P56817 501 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TIGD7Q6NT04 549 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TMPRSS6Q8IU80 811 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 HS6ST3Q8IZP7 471 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 AENQ8WTP8 325 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TBCBQ99426 244 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 APOL2Q9BQE5 337 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 H2AFY2Q9P0M6 372 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SH3BP1Q9Y3L3 701 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 PCDHA3Q9Y5H8 950 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 CCDC159P0C7I6 412 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 ZNF23P17027 643 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 RPL21P46778 160 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SLC11A2P49281 568 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 BLVRAP53004 296 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 AARS2Q5JTZ9 985 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 CACHD1Q5VU97 1274 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 DDX53Q86TM3 631 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 CINPQ9BW66 212 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 TMEM245Q9H330 911 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 IARS2Q9NSE4 1012 aaKnown RBP11.78□□□□□ -0.52
PTPRF-203ENST00000372407 ABCC6O95255 1503 aa11.78□□□□□ -0.52
PTPRF-203ENST00000372407 NCAM2O15394 837 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 SASH3O75995 380 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 FAM153BP0C7A2 387 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 RPL10AP62906 217 aaKnown RBP11.77□□□□□ -0.52
PTPRF-203ENST00000372407 BMPR2Q13873 1038 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 FAM153CQ494X1 144 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 FAM9CQ8IZT9 166 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 BLOC1S4Q9NUP1 217 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 IL1RAPL1Q9NZN1 696 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 FAM153AQ9UHL3 310 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 MYOM1P52179 1685 aa11.77□□□□□ -0.52
PTPRF-203ENST00000372407 A0A087X0B3 334 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CCL15-CCL14A0A0B4J2E2 113 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 DDTLA6NHG4 134 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 FBXO21O94952 628 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 RGS2P41220 211 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 ELK3P41970 407 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 WASHC5Q12768 1159 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 MRPL28Q13084 256 aaKnown RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 ZNF177Q13360 481 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CCL15Q16663 113 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 SH3RF1Q7Z6J0 888 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 DIS3LQ8TF46 1054 aaKnown RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 HES6Q96HZ4 224 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 SYTL2Q9HCH5 934 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 AVENQ9NQS1 362 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 PRDM5Q9NQX1 630 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 IL17RBQ9NRM6 502 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 E9PBE3 544 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 KLHL41O60662 606 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 ARIH2O95376 493 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CASP7P55210 303 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 UBE3AQ05086 875 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 NFIL3Q16649 462 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 TMEM119Q4V9L6 283 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CCDC92Q53HC0 331 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 MAP1SQ66K74 1059 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 GPR141Q7Z602 305 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 SPIRE2Q8WWL2 714 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 C10orf88Q9H8K7 445 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 GBA2Q9HCG7 927 aaPredicted RBP11.77□□□□□ -0.53
PTPRF-203ENST00000372407 CYP4F12Q9HCS2 524 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 SELENONQ9NZV5 590 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 RNF112Q9ULX5 631 aa11.77□□□□□ -0.53
PTPRF-203ENST00000372407 SALL1Q9NSC2 1324 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms