RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 DNAJC17Q9NVM6 304 aaKnown RBP14.68□□□□□ -0.06
VPS29-201ENST00000360579 PPP4R2Q9NY27 417 aa14.68□□□□□ -0.06
VPS29-201ENST00000360579 KIAA1522Q9P206 1035 aaPredicted RBP14.68□□□□□ -0.06
VPS29-201ENST00000360579 WDR35Q9P2L0 1181 aa14.68□□□□□ -0.06
VPS29-201ENST00000360579 CHORDC1Q9UHD1 332 aaPredicted RBP14.68□□□□□ -0.06
VPS29-201ENST00000360579 CELSR3Q9NYQ7 3312 aa14.68□□□□□ -0.06
VPS29-201ENST00000360579 CACNG3O60359 315 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 STAU1O95793 577 aaKnown RBP14.67□□□□□ -0.06
VPS29-201ENST00000360579 TNNI1P19237 187 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 GOLGA8FQ08AF8 430 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 GOLGA8DPQ0D2H9 430 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 GRIK2Q13002 908 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 TOGARAM2Q6ZUX3 1019 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 CCDC65Q8IXS2 484 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 B3GNT5Q9BYG0 378 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 FGFBP2Q9BYJ0 223 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 DPEP3Q9H4B8 488 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 CCSER2Q9H7U1 834 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 CD248Q9HCU0 757 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 DMAP1Q9NPF5 467 aaPredicted RBP14.67□□□□□ -0.06
VPS29-201ENST00000360579 SCUBE2Q9NQ36 999 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.67□□□□□ -0.06
VPS29-201ENST00000360579 IL37Q9NZH6 218 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 HSPBP1Q9NZL4 362 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 HCN2Q9UL51 889 aa14.67□□□□□ -0.06
VPS29-201ENST00000360579 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.67□□□□□ -0.06
VPS29-201ENST00000360579 SRPRBQ9Y5M8 271 aaKnown RBP14.67□□□□□ -0.06
VPS29-201ENST00000360579 A0A1B0GTW7 788 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 FAM92AA1XBS5 289 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 EIF4E1BA6NMX2 242 aaKnown RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 NEDD8-MDP1E9PL57 170 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 CLDN5O00501 218 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 CST3P01034 146 aaPredicted RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 ZDHHC11BP0C7U3 371 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 DLATP10515 647 aaKnown RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 TYRP14679 529 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 CD6P30203 668 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 ATICP31939 592 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 STAT6P42226 847 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 SLC5A3P53794 718 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 TRPC3Q13507 836 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 STARD3Q14849 445 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 SNRNP35Q16560 246 aaKnown RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 IL27RAQ6UWB1 636 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 HTR3DQ70Z44 454 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 METTL3Q86U44 580 aaKnown RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 PNPLA1Q8N8W4 532 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 SPRYD3Q8NCJ5 442 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 DNASE2BQ8WZ79 361 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 SMARCD1Q96GM5 515 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 MRGPRX1Q96LB2 322 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 ACOX2Q99424 681 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 BBS2Q9BXC9 721 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 MARK1Q9P0L2 795 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 DKK4Q9UBT3 224 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 FBXO2Q9UK22 296 aaPredicted RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 LSM7Q9UK45 103 aaKnown RBP14.66□□□□□ -0.06
VPS29-201ENST00000360579 PCOLCE2Q9UKZ9 415 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 NME7Q9Y5B8 376 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 ADAMTS20P59510 1910 aa14.66□□□□□ -0.06
VPS29-201ENST00000360579 MEI4A8MW99 385 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 TRIM24O15164 1050 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 TLR5O60602 858 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 CBFA2T3O75081 653 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 CER1O95813 267 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 ZNF883P0CG24 379 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 IRF1P10914 325 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 ZNF132P52740 706 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 KIAA1324Q6UXG2 1013 aaKnown RBP14.65□□□□□ -0.06
VPS29-201ENST00000360579 FAM35AQ86V20 835 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 CADM4Q8NFZ8 388 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 SCAMP5Q8TAC9 235 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 SETD7Q8WTS6 366 aaKnown RBP14.65□□□□□ -0.06
VPS29-201ENST00000360579 SYAP1Q96A49 352 aaPredicted RBP14.65□□□□□ -0.06
VPS29-201ENST00000360579 TNIP3Q96KP6 325 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 KCNK16Q96T55 309 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 CGRRF1Q99675 332 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 MED10Q9BTT4 135 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 LRRC27Q9C0I9 530 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 FBXO44Q9H4M3 255 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 GMIPQ9P107 970 aa14.65□□□□□ -0.06
VPS29-201ENST00000360579 ADAMTS9Q9P2N4 1935 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 MYO18AQ92614 2054 aaKnown RBP14.64□□□□□ -0.07
VPS29-201ENST00000360579 ACACAQ13085 2346 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 NPC1O15118 1278 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 EIF3DO15371 548 aaKnown RBP eCLIP14.64□□□□□ -0.07
VPS29-201ENST00000360579 DGKGP49619 791 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 SNRPFP62306 86 aaKnown RBP14.64□□□□□ -0.07
VPS29-201ENST00000360579 PSMD6Q15008 389 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 E2F5Q15329 346 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 MDM1Q8TC05 714 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 CCDC127Q96BQ5 260 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 CDC6Q99741 560 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 TLR8Q9NR97 1041 aaKnown RBP14.64□□□□□ -0.07
VPS29-201ENST00000360579 CACNA2D2Q9NY47 1150 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 NXF1Q9UBU9 619 aaKnown RBP14.64□□□□□ -0.07
VPS29-201ENST00000360579 RAXQ9Y2V3 346 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 RAD54BQ9Y620 910 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 CLIC4Q9Y696 253 aa14.64□□□□□ -0.07
VPS29-201ENST00000360579 MYOFQ9NZM1 2061 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms