RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CCNYQ8ND76 341 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 LNX1Q8TBB1 728 aaPredicted RBP9.58□□□□□ -0.88
UPF2-202ENST00000357604 PBKQ96KB5 322 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 CALN1Q9BXU9 219 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 ADAM7Q9H2U9 754 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 GMIPQ9P107 970 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 CDH7Q9ULB5 785 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 KAT6AQ92794 2004 aa9.58□□□□□ -0.88
UPF2-202ENST00000357604 A0A1W2PQH9 124 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 AP3B1O00203 1094 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 MTSS1O43312 755 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 ALADP13716 330 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 CFAP221Q4G0U5 840 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 FNDC3BQ53EP0 1204 aaKnown RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 GRASPQ7Z6J2 395 aaPredicted RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 PIGZQ86VD9 579 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 CEP112Q8N8E3 955 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 LPIN3Q9BQK8 851 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 ADAMTS1Q9UHI8 967 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 RHOP08100 348 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 ATP11AP98196 1134 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 GPS2Q13227 327 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 LONRF2Q1L5Z9 754 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 PPP1R21Q6ZMI0 780 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 UBE2Q1Q7Z7E8 422 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 LZTR1Q8N653 840 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 FRMD8P1Q9BZ68 369 aaPredicted RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 ZNFX1Q9P2E3 1918 aaKnown RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 IRAK2O43187 625 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 TEX33O43247 280 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 NDUFS2O75306 463 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 CNPP09543 421 aaKnown RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 MTMR3Q13615 1198 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 SLC47A2Q86VL8 602 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 GPIHBP1Q8IV16 184 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 BPIFB1Q8TDL5 484 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 ING5Q8WYH8 240 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 IFT43Q96FT9 208 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 SPON2Q9BUD6 331 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.57□□□□□ -0.88
UPF2-202ENST00000357604 HYOU1Q9Y4L1 999 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 TTLL3Q9Y4R7 772 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 DFFAO00273 331 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 NEMP1O14524 444 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 TIMM44O43615 452 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 SCNN1AP37088 669 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 RAD23BP54727 409 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 RTP2Q5QGT7 225 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 SLC8B1Q6J4K2 584 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 RETSATQ6NUM9 610 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 TMCO3Q6UWJ1 677 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 ARHGEF18Q6ZSZ5 1173 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 PHLDB2Q86SQ0 1253 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 RNF10Q8N5U6 811 aaKnown RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 SHC3Q92529 594 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 SMARCD2Q92925 531 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 PSMG2Q969U7 264 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 B3GALT6Q96L58 329 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 BRD8Q9H0E9 1235 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 POLMQ9NP87 494 aaPredicted RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 CLIC5Q9NZA1 410 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 KIAA1522Q9P206 1035 aaPredicted RBP9.57□□□□□ -0.88
UPF2-202ENST00000357604 SUN2Q9UH99 717 aa9.57□□□□□ -0.88
UPF2-202ENST00000357604 PSTPIP1O43586 416 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 TTC31Q49AM3 519 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 PPP6R3Q5H9R7 873 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 MFN1Q8IWA4 741 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 ZMAT2Q96NC0 199 aaKnown RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 CINPQ9BW66 212 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 AIPL1Q9NZN9 384 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 AARSP49588 968 aaKnown RBP eCLIP9.56□□□□□ -0.887e-6■□□□□ 11.2
UPF2-202ENST00000357604 TEAD2Q15562 447 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 TRIP4Q15650 581 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 SLC4A11Q8NBS3 891 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 SUSD6Q92537 303 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 FIZ1Q96SL8 496 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 NELL2Q99435 816 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 HINFPQ9BQA5 517 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 AVENQ9NQS1 362 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 FSCN2O14926 492 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 NPC1O15118 1278 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 LATS1O95835 1130 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 ASLP04424 464 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 TUBP50607 506 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 CLDN10P78369 228 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 GFPT1Q06210 699 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 DARS2Q6PI48 645 aaKnown RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 CEP68Q76N32 757 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 PHF13Q86YI8 300 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 LGI2Q8N0V4 545 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 DNAJC7Q99615 494 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 OBP2AQ9NY56 170 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 DNPEPQ9ULA0 475 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 CCDC66A2RUB6 948 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 TBC1D3BA6NDS4 549 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 CLDN5O00501 218 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 BUB1O43683 1085 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 ERLIN1O75477 346 aa9.56□□□□□ -0.88
UPF2-202ENST00000357604 CST3P01034 146 aaPredicted RBP9.56□□□□□ -0.88
UPF2-202ENST00000357604 MAGEA9P43362 315 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms