RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 STK32AQ8WU08 396 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 RSAD2Q8WXG1 361 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SMG7Q92540 1137 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 HSFY1Q96LI6 401 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 MYADMQ96S97 322 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 UBXN6Q9BZV1 441 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 NUCKS1Q9H1E3 243 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 SMOC2Q9H3U7 446 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 METTL5Q9NRN9 209 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 SSX2IPQ9Y2D8 614 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 OBSL1O75147 1896 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 COL4A3Q01955 1670 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 OTOL1A6NHN0 477 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 EIF3CLB5ME19 914 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 COCHO43405 550 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 LRG1P02750 347 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SETSIPP0DME0 302 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 MAGEA1P43355 309 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 NSFP46459 744 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 SLC6A3Q01959 620 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 CCDC173Q0VFZ6 552 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 FAM102AQ5T9C2 384 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 LIN9Q5TKA1 542 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 CYP4V2Q6ZWL3 525 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 C2orf15Q8WU43 125 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 FGF13Q92913 245 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 MCEEQ96PE7 176 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 GAS2L1Q99501 681 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 EIF3CQ99613 913 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 PLA2G2FQ9BZM2 168 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 CD320Q9NPF0 282 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.22□□□□□ -1.73
LIG4-201ENST00000356922 SMPD4Q9NXE4 827 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 CNOT8Q9UFF9 292 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 SCML2Q9UQR0 700 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SNX10Q9Y5X0 201 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 BZW2Q9Y6E2 419 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 TCF20Q9UGU0 1960 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 DENND4CQ5VZ89 1909 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 ASPMQ8IZT6 3477 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SYNJ2BP-COX16A0A087WUM0 186 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 TMEM191CA6NGB0 347 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 C2CD4BA6NLJ0 364 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 TRIM66O15016 1216 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 NRDCO43847 1150 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 LSM8O95777 96 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 IL9P15248 144 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 IL1R2P27930 398 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 EPHB3P54753 998 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 EPHA5P54756 1037 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 GSDMDP57764 484 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 YWHAGP61981 247 aaKnown RBP eCLIP4.22□□□□□ -1.73
LIG4-201ENST00000356922 YWHAZP63104 245 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 ATP11AP98196 1134 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SMARCB1Q12824 385 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 PABPC1LQ4VXU2 614 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 DCAF6Q58WW2 860 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 MIB1Q86YT6 1006 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 SUSD6Q92537 303 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 FGF14Q92915 247 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 FBXO32Q969P5 355 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 NT5C3BQ969T7 300 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 FAM149B1Q96BN6 582 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 ACSF2Q96CM8 615 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 ZNF512Q96ME7 567 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 OXCT2Q9BYC2 517 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 ATXN3LQ9H3M9 355 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 DEF6Q9H4E7 631 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 UBE2ZQ9H832 354 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 LRRC4Q9HBW1 653 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 PNPLA8Q9NP80 782 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 LZTFL1Q9NQ48 299 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 PIGVQ9NUD9 493 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 ZNHIT6Q9NWK9 470 aaKnown RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 COX16Q9P0S2 106 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 HSFX1Q9UBD0 423 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 STK39Q9UEW8 545 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 DAAM1Q9Y4D1 1078 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 USP15Q9Y4E8 981 aaPredicted RBP4.22□□□□□ -1.73
LIG4-201ENST00000356922 CAPN6Q9Y6Q1 641 aa4.22□□□□□ -1.73
LIG4-201ENST00000356922 CARNS1A5YM72 827 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 OAS1P00973 400 aaKnown RBP4.21□□□□□ -1.73
LIG4-201ENST00000356922 CYP1A2P05177 515 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 KRT3P12035 628 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 NCAM1P13591 858 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 PTPN2P17706 415 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 RPL10AP62906 217 aaKnown RBP4.21□□□□□ -1.73
LIG4-201ENST00000356922 MESP2Q0VG99 397 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 LLGL1Q15334 1064 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 NAIF1Q69YI7 327 aaPredicted RBP4.21□□□□□ -1.73
LIG4-201ENST00000356922 BNIPLQ7Z465 357 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 NPAS3Q8IXF0 933 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 CCDC170Q8IYT3 715 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 RXFP2Q8WXD0 754 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 SPOCK2Q92563 424 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 PPP2R3CQ969Q6 453 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 ZNF653Q96CK0 615 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 IQCDQ96DY2 449 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 ZFYVE19Q96K21 471 aa4.21□□□□□ -1.73
LIG4-201ENST00000356922 PEBP4Q96S96 227 aa4.21□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms