RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 MFSD7Q6UXD7 560 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 POLNQ7Z5Q5 900 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 GPR142Q7Z601 462 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PLEKHH3Q7Z736 793 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 ANKMY2Q8IV38 441 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 RBM15BQ8NDT2 890 aaKnown RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 SLC44A1Q8WWI5 657 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 CCDC127Q96BQ5 260 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 HIC2Q96JB3 615 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 SPATA33Q96N06 139 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 C11orf70Q9BRQ4 267 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 NMUR2Q9GZQ4 415 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 FAM96AQ9H5X1 160 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 S100A14Q9HCY8 104 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PNPLA8Q9NP80 782 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 USTQ9Y2C2 406 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 STYXL1Q9Y6J8 313 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 IGKV6-21A0A0C4DH24 114 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 GOLGA8IPA6NC78 632 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 DCAF8L1A6NGE4 600 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 GOLGA8JA6NMD2 632 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 SERPINA6P08185 405 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 INHBAP08476 426 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 ZCCHC18P0CG32 403 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 ATF7P17544 494 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 STIP1P31948 543 aaKnown RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PTK7Q13308 1070 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PIGHQ14442 188 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 HSDL1Q3SXM5 330 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 C15orf39Q6ZRI6 1047 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 TRMT1LQ7Z2T5 733 aaKnown RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 DHDDSQ86SQ9 333 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 RASSF3Q86WH2 238 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 FBXO16Q8IX29 292 aaPredicted RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 GPD1LQ8N335 351 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 GLIS1Q8NBF1 620 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 FAM118BQ9BPY3 351 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 UBE2OQ9C0C9 1292 aaKnown RBP16.49■□□□□ 0.23
HMGA1-202ENST00000347617 KLHL4Q9C0H6 718 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 NMRK2Q9NPI5 230 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PLK2Q9NYY3 685 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 SOX13Q9UN79 622 aa16.49■□□□□ 0.23
HMGA1-202ENST00000347617 PLXNB2O15031 1838 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 COPEO14579 308 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 HBP1O60381 514 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 ZSCAN5DPP0CG00 497 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 CCDC166P0CW27 439 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 BGNP21810 368 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 SSTR1P30872 391 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 ZNF200P98182 395 aaPredicted RBP16.48■□□□□ 0.23
HMGA1-202ENST00000347617 WASHC5Q12768 1159 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 HIC1Q14526 733 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 HSP90AA5PQ58FG0 334 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 TTC39BQ5VTQ0 682 aaPredicted RBP16.48■□□□□ 0.23
HMGA1-202ENST00000347617 CAPN12Q6ZSI9 719 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 SH2D5Q6ZV89 423 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 NIPA2Q8N8Q9 360 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 FBXO36Q8NEA4 188 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 GFM2Q969S9 779 aaKnown RBP16.48■□□□□ 0.23
HMGA1-202ENST00000347617 TTC17Q96AE7 1141 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 MRRFQ96E11 262 aaKnown RBP16.48■□□□□ 0.23
HMGA1-202ENST00000347617 FAM111AQ96PZ2 611 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 KATNBL1Q9H079 304 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 PPARGC1AQ9UBK2 798 aaKnown RBP16.48■□□□□ 0.23
HMGA1-202ENST00000347617 SLC7A8Q9UHI5 535 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 ZNF180Q9UJW8 692 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 PLXNA1Q9UIW2 1896 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 ZNF236Q9UL36 1845 aa16.48■□□□□ 0.23
HMGA1-202ENST00000347617 ADGRA2Q96PE1 1338 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 A0A1B0GVG6 124 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 TMEM191CA6NGB0 347 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 BIRC5O15392 142 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CCNT2O60583 730 aaKnown RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 ENO1P06733 434 aaKnown RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 TMEM191BP0C7N4 346 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 VAV1P15498 845 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 TBXAS1P24557 533 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 GJC1P36383 396 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 EFNA5P52803 228 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CLDN10P78369 228 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 MXD4Q14582 209 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 EFHC1Q5JVL4 640 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 ZFYVE27Q5T4F4 411 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 KAZNQ674X7 775 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 SLFN12LQ6IEE8 588 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 DPP9Q86TI2 863 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 RASAL3Q86YV0 1011 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 RHPN2Q8IUC4 686 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CRLF3Q8IUI8 442 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CPT1BQ92523 772 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 DGCR14Q96DF8 476 aaKnown RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CCDC106Q9BWC9 280 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-202ENST00000347617 CNTN6Q9UQ52 1028 aa16.47■□□□□ 0.23
HMGA1-202ENST00000347617 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-202ENST00000347617 OPHN1O60890 802 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 KRT37O76014 449 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 KLHL2O95198 593 aa16.46■□□□□ 0.23
HMGA1-202ENST00000347617 LSM8O95777 96 aaKnown RBP16.46■□□□□ 0.23
HMGA1-202ENST00000347617 BAG2O95816 211 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms