RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ERMARDQ5T6L9 678 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 ALS2CLQ60I27 953 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 PRUNE1Q86TP1 453 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 FAM131BQ86XD5 332 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 CCDC185Q8N715 623 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 RIN2Q8WYP3 895 aaPredicted RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 ART4Q93070 314 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 NKD2Q969F2 451 aaPredicted RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 ZIM3Q96PE6 472 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 SLC2A13Q96QE2 648 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 MED4Q9NPJ6 270 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 COX16Q9P0S2 106 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 WHRNQ9P202 907 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 MTRF1LQ9UGC7 380 aaKnown RBP13.96□□□□□ -0.17
HMGB1-202ENST00000339872 AP4E1Q9UPM8 1137 aa13.96□□□□□ -0.17
HMGB1-202ENST00000339872 TBKBP1A7MCY6 615 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 APOC4-APOC2K7ER74 178 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 ZBED1O96006 694 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 APOC2P02655 101 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 PECAM1P16284 738 aaPredicted RBP13.96□□□□□ -0.18
HMGB1-202ENST00000339872 HSD17B3P37058 310 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 ADCY8P40145 1251 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 SLC39A12Q504Y0 691 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 OTUD1Q5VV17 481 aaPredicted RBP13.96□□□□□ -0.18
HMGB1-202ENST00000339872 SYPL2Q5VXT5 272 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 C4orf50Q6ZRC1 276 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 CEP57Q86XR8 500 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 ALLCQ8N6M5 410 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 CCDC89Q8N998 374 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 SLC35B2Q8TB61 432 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 UBLCP1Q8WVY7 318 aaPredicted RBP13.96□□□□□ -0.18
HMGB1-202ENST00000339872 RNF157Q96PX1 679 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 NPY6RQ99463 290 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 TMEM121Q9BTD3 319 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 DHX35Q9H5Z1 703 aaKnown RBP13.96□□□□□ -0.18
HMGB1-202ENST00000339872 NAALADL1Q9UQQ1 740 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 ATP8A1Q9Y2Q0 1164 aa13.96□□□□□ -0.18
HMGB1-202ENST00000339872 M0QYT0 321 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 POLR3GO15318 223 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 OAZ2O95190 189 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 IVDP26440 423 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 SLC11A1P49279 550 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 TFDP2Q14188 446 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 VARS2Q5ST30 1063 aaKnown RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FAM43BQ6ZT52 329 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 CRIPAKQ8N1N5 446 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 MRPL9Q9BYD2 267 aaKnown RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FRMD8P1Q9BZ68 369 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 DRG1Q9Y295 367 aaKnown RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 MYO16Q9Y6X6 1858 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 SGK1O00141 431 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 SYN3O14994 580 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 SYF2O95926 243 aaKnown RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 LTFP02788 710 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 ALDH2P05091 517 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 ITGAVP06756 1048 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 KLRC2P26717 231 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 PBX3P40426 434 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 NME3Q13232 169 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 MTMR3Q13615 1198 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 UAP1Q16222 522 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 ANKRD20A8PQ5CZ79 823 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FAM171A1Q5VUB5 890 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FBXO46Q6PJ61 603 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 NPNTQ6UXI9 565 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 GLIS1Q8NBF1 620 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FAM71BQ8TC56 605 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 PIK3R5Q8WYR1 880 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 NT5C3BQ969T7 300 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 ZNF670Q9BS34 389 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 COLEC11Q9BWP8 271 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FAM129AQ9BZQ8 928 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 MARCH5Q9NX47 278 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 ABI2Q9NYB9 513 aaPredicted RBP13.95□□□□□ -0.18
HMGB1-202ENST00000339872 TBX21Q9UL17 535 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 FAN1Q9Y2M0 1017 aa13.95□□□□□ -0.18
HMGB1-202ENST00000339872 MCF2LO15068 1137 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 PPFIA2O75334 1257 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 UPP2O95045 317 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 FYNP06241 537 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 NCAM1P13591 858 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 ITIH2P19823 946 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 IL4RP24394 825 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 CYP2F1P24903 491 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 L1CAMP32004 1257 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 RDXP35241 583 aaKnown RBP13.94□□□□□ -0.18
HMGB1-202ENST00000339872 GRIK1P39086 918 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 ITGA8P53708 1063 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 DEUP1Q05D60 604 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 IFRD2Q12894 506 aaPredicted RBP13.94□□□□□ -0.18
HMGB1-202ENST00000339872 DPYSL2Q16555 572 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 C1orf53Q5VUE5 145 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 DCP1BQ8IZD4 617 aaKnown RBP13.94□□□□□ -0.18
HMGB1-202ENST00000339872 IQCKQ8N0W5 287 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 SLC7A14Q8TBB6 771 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 B3GALT6Q96L58 329 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 MAGEB5Q9BZ81 275 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 GPR62Q9BZJ7 368 aa13.94□□□□□ -0.18
HMGB1-202ENST00000339872 ZCWPW1Q9H0M4 648 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms