RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 NT5DC4Q86YG4 428 aa13□□□□□ -0.33
SDC3-201ENST00000336798 DPP10Q8N608 796 aa13□□□□□ -0.33
SDC3-201ENST00000336798 POMGNT2Q8NAT1 580 aa13□□□□□ -0.33
SDC3-201ENST00000336798 UTP15Q8TED0 518 aaKnown RBP13□□□□□ -0.33
SDC3-201ENST00000336798 OPTNQ96CV9 577 aa13□□□□□ -0.33
SDC3-201ENST00000336798 TMEM121Q9BTD3 319 aa13□□□□□ -0.33
SDC3-201ENST00000336798 VPS33BQ9H267 617 aa13□□□□□ -0.33
SDC3-201ENST00000336798 KLHL20Q9Y2M5 609 aa13□□□□□ -0.33
SDC3-201ENST00000336798 PIPSLA2A3N6 862 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SLC2A4P14672 509 aa13□□□□□ -0.33
SDC3-201ENST00000336798 FDFT1P37268 417 aa13□□□□□ -0.33
SDC3-201ENST00000336798 C16orf59Q7L2K0 433 aa13□□□□□ -0.33
SDC3-201ENST00000336798 EFL1Q7Z2Z2 1120 aaKnown RBP13□□□□□ -0.33
SDC3-201ENST00000336798 FHDC1Q9C0D6 1143 aaPredicted RBP13□□□□□ -0.33
SDC3-201ENST00000336798 EPB41L4AQ9HCS5 686 aaPredicted RBP13□□□□□ -0.33
SDC3-201ENST00000336798 KLHL1Q9NR64 748 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SMAPO00193 183 aa13□□□□□ -0.33
SDC3-201ENST00000336798 NUP62P37198 522 aaPredicted RBP13□□□□□ -0.33
SDC3-201ENST00000336798 GSTA3Q16772 222 aa13□□□□□ -0.33
SDC3-201ENST00000336798 C11orf88Q6PI97 169 aa13□□□□□ -0.33
SDC3-201ENST00000336798 MACC1Q6ZN28 852 aa13□□□□□ -0.33
SDC3-201ENST00000336798 CCDC149Q6ZUS6 474 aa13□□□□□ -0.33
SDC3-201ENST00000336798 HDHD2Q9H0R4 259 aa13□□□□□ -0.33
SDC3-201ENST00000336798 RHBGQ9H310 441 aa13□□□□□ -0.33
SDC3-201ENST00000336798 TRPM5Q9NZQ8 1165 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SEPT3Q9UH03 358 aa13□□□□□ -0.33
SDC3-201ENST00000336798 ZDHHC9Q9Y397 364 aa13□□□□□ -0.33
SDC3-201ENST00000336798 SESN1Q9Y6P5 492 aa13□□□□□ -0.33
SDC3-201ENST00000336798 EIF3DO15371 548 aaKnown RBP eCLIP12.99□□□□□ -0.33
SDC3-201ENST00000336798 ENTPD3O75355 529 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CCNG1P51959 295 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 EML3Q32P44 896 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 OSBPL6Q9BZF3 934 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 DIABLOQ9NR28 239 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 AGPAT3Q9NRZ7 376 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 RNF19AQ9NV58 838 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 JCHAINP01591 159 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ZCCHC18P0CG32 403 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 AKAP5P24588 427 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SERPINB8P50452 374 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 BMPR2Q13873 1038 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 LRRC34Q8IZ02 419 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ATG16L2Q8NAA4 619 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 KLHL23Q8NBE8 558 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ACER1Q8TDN7 264 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 OSMRQ99650 979 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SPRTNQ9H040 489 aaPredicted RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 POLG2Q9UHN1 485 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 DNAJC16Q9Y2G8 782 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 AAR2Q9Y312 384 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 PDZK1P1A8MUH7 402 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 GYPCP04921 128 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SLC2A3P11169 496 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ACAT1P24752 427 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 SOX6P35712 828 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CCZ1BP86790 482 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CCZ1P86791 482 aaPredicted RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 EIF2B5Q13144 721 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 POU6F1Q14863 301 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CYP4Z1Q86W10 505 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 RDM1Q8NG50 284 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 FIG4Q92562 907 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 AHCYL2Q96HN2 611 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 PPP1R10Q96QC0 940 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 SLC9A8Q9Y2E8 581 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 PDS5AQ29RF7 1337 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 GTF2A2P52657 109 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CHRNB3Q05901 458 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 BOP1Q14137 746 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 EPHX4Q8IUS5 362 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CAMKK2Q96RR4 588 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SEPHS2Q99611 448 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SENP6Q9GZR1 1112 aaPredicted RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 KCND2Q9NZV8 630 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SSU72P8A0A1W2PR75 194 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 FOXN3O00409 490 aaPredicted RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 TBX3O15119 743 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 SPAG6O75602 509 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 ITGALP20701 1170 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 OTUD4Q01804 1114 aaKnown RBP12.99□□□□□ -0.33
SDC3-201ENST00000336798 VAC14Q08AM6 782 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 RALGDSQ12967 914 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 AGBL2Q5U5Z8 902 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 PPP1R13LQ8WUF5 828 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 CASKIN2Q8WXE0 1202 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 GPAMQ9HCL2 828 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 STARD7Q9NQZ5 370 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 FBXL21Q9UKT6 434 aa12.99□□□□□ -0.33
SDC3-201ENST00000336798 IFRD1O00458 451 aaPredicted RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 ARP10275 920 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 MSH3P20585 1137 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 SP100P23497 879 aaPredicted RBP12.98□□□□□ -0.33
SDC3-201ENST00000336798 KLRC2P26717 231 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 DSG1Q02413 1049 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 ACOX1Q15067 660 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 PLEKHH3Q7Z736 793 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 CATSPER2Q96P56 530 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 PDGFCQ9NRA1 345 aa12.98□□□□□ -0.33
SDC3-201ENST00000336798 SNTG2Q9NY99 539 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms